Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_009812.1 Length=42653 Score E Sequences producing significant alignments: (Bits) Value seq641 217 4e-52 >seq641 Length=27874 Score = 217 bits (240), Expect = 4e-52 Identities = 753/1155 (65%), Gaps = 31/1155 (3%) Strand=Plus/Minus Query 3900 TAGGAGGAAATAAATTATGACTATCAAATTAAAAAACAACCTCGCGAATTACGAGGAAAA 3959 ||||||||| | || |||||| ||||| |||||| | || ||||| | ||||| Sbjct 16473 TAGGAGGAATTTAAATATGACAATCAATTTAAAAGGAATGGTC---AATTATCAAGAAAA 16417 Query 3960 ACGGACAGCTTTTGTTAACGCTGTTAAAAACGAAGACACGCAAGAAATTCAAAATAAAGC 4019 || | ||||||| || | |||| ||||| | || | || |||| |||||| || Sbjct 16416 GCGTAAAGCTTTTATTGAATCTGTAAAAAATGGTGATCCACAGGAAAAACAAAATGAATT 16357 Query 4020 ATATGTGGAAATGGTAGACGCGATGGCAGCTGATATTATGGAACAAGCTAAGAAAGAAGC 4079 ||| | | | | | || | |||| || || | | | | ||||| |||||||| Sbjct 16356 ATACGAAGTATCTATGAATGCTTTAGCAGAAGACATGGTAGCAGAGGCTAAAAAAGAAGC 16297 Query 4080 ACGTCAAGAAGCGGACGCATATATTTCAGCTAGCCGAACAGACAAAAATATCACGAATGA 4139 ||| ||||| || | || ||| ||| || || ||| || ||| | | Sbjct 16296 TCGTATGGAAGCAGAAGAATTTATCAATGCTTCAAAAATGGATAAAGGCATTACGCCTAA 16237 Query 4140 AGAAATTAAATTCTTCAATGATATTAAT-AAAGAGGTTGGATATAAAGAAGAAACATTGC 4198 |||| |||||||||| || | | | | ||| ||| |||| |||| ||| | | | Sbjct 16236 AGAAGTTAAATTCTTTAACGCAGTCACTGAAACAGGATGGA----AAGATGAAGAACTAC 16181 Query 4199 TACCACAAACAGTCGTTGATGAAATCTTTGAAGATTTAACAACTGAGCATCCTTTCCTTG 4258 | || ||||| || |||||||| ||| | |||||||||| || | ||| || || Sbjct 16180 TTCCTGAAACAACAGTGGATGAAATTTTTAATGATTTAACAAGAGAACGTCCATTA-TTA 16122 Query 4259 CATCTATTGGAATGC--GCACGACTGGTTTGCGTACTAAGTTCTTAAAATCCGAAACTAG 4316 | ||| | | | || || ||||| || || |||||||||| || | | Sbjct 16121 AAAGAATTAGGCTTAAAGTAC-ACAGGTTTACGCTTGAAAATCTTAAAATCTGATCCAAA 16063 Query 4317 CGGGGTAGCGGTTTGGGGTAAAATCTTCGGCGAAATCAAAGGTCAATTAGACGCTACGTT 4376 || | |||||||||||||| ||||||||||| |||||||| ||||| || || || Sbjct 16062 AGGTGCCATTGTTTGGGGTAAAATTTTCGGCGAAATTAAAGGTCAGTTAGATGCAACCTT 16003 Query 4377 CAGCGATGAAGAATCTATTCAAAACAAGCTAACTGCTTTTGTAGTGGTTCCTAAGGATCT 4436 |||||| || || | | |||| ||| ||| || |||||||| | || || ||||| Sbjct 16002 CAGCGAAGACGATGCAAAACAAAGCAAAGCAACAGCATTTGTAGTATTACCAAACGATCT 15943 Query 4437 TGAAAAATTCGGTCCAGCATGGGTTAAACGCTTTGTTGTTACTCAAATTGAAGAAGCGTT 4496 | ||| ||||| | ||| ||||||| | ||| |||||||||| |||| || || Sbjct 15942 ATTAGAATATGGTCCTGTTTGGATTAAACGTTATGTAACTACTCAAATTAAAGAGGCATT 15883 Query 4497 TGCTGTTGCACTCGAAAGTGCGTATATTGTTGGGGACGGTAATGACAAACCCATCGGCTT 4556 |||||||| ||||| ||| | | ||| || || || || || || || || || Sbjct 15882 TGCTGTTGGCTTCGAAGATGCTTTCCTAAATGGCGATGGAAACGATAAGCCTATTGGTTT 15823 Query 4557 GAATCGTAAAGTTGGGAAAGGTAG-TACGGTAGTAGATG-GCGTA--TATGCTGAAAAAG 4612 | |||| | || | ||||| || ||| | | || | || ||| | || |||| Sbjct 15822 AACTCGT-GACTTAGCAAAGGGAGCTACTTCAAACGGTGTGACTACTTATCCAGAGAAAG 15764 Query 4613 CAGCTACTGGTACACTAACGTTTGCTAATCCAAAAACAACTGTGAATGAATTGACAGATG 4672 ||| | || || |||| ||||| || ||||||| | | || ||||| | ||| Sbjct 15763 AAGCAGCAGGAACTTTAACTTTTGCCGATGAAAAAACAGCGATTAAAGAATTAAAAGAAA 15704 Query 4673 TGTATAAATACCACTCTGTTAAAGAAAATGGACATCCATTAAATGTTGCAGGTAAAGTTA 4732 || ||||||||| ||||||||||||||||| | | | ||| || || ||||| Sbjct 15703 TGCGTAAATACCATTCTGTTAAAGAAAATGGCAAACGTATTTCTGTCGCTGGGAAAGT-- 15646 Query 4733 CGTTACTAGT-CAATCCGACA-GACGCATGGGATGTTAAGAAACAATACACAAGCTTAAA 4790 |||| | | | | || | | || || | |||| || | | | | | || || Sbjct 15645 AGTTATTGTTGCGAGCCCAGATGAAGCTTTGGATATTGAAACAGAGTTTACTTCTCGTAA 15586 Query 4791 TGCGAATGGTGTA-TATGTTACGGCACTTCCATTCAATTTGAACATTATCGAATCGTTGT 4849 ||| ||||| | | | |||||| | | || || ||| ||| | ||||| || Sbjct 15585 TGC-AATGGGGGACTGGGTTACGAAATTACCGTTTGGATTGCGGATTGTGGAATC--TGA 15529 Query 4850 TCGTTCCAGAAA----AGAAAGCCATTTCTTATGTGGCAGAACGTTACGATGCACTGATT 4905 | ||||| ||| |||| | ||| ||| | |||||||||||| | | Sbjct 15528 T--TTCCAAAAATCTGGAAAAGTTACCACTTTTGTTAGTGGTCGTTACGATGCATTTGCT 15471 Query 4906 GGCGGACCATTGGACATTGGTACTTACGATCAAACGCTTGCCATTGAAGATCTCAACCTA 4965 | ||| |||| | || ||||||||||| | || | |||||| || Sbjct 15470 GCAGGAGCATTAGTGATCAAAGAATACGATCAAACATTAGCTTTAGAAGATTGTCGTTTA 15411 Query 4966 TATGCTGCAAAACAATTTGCATATGGTAAAGCAAAAGATGATAAAGCTGCTGCTGTGTGG 5025 | |||||||||||||||| | |||||||||| |||| | |||| ||| ||||| ||| Sbjct 15410 TTCACTGCAAAACAATTTGCGTTTGGTAAAGCACAAGACAACAAAGTTGCAGCTGTATGG 15351 Query 5026 ACACTAAATATTAAT 5040 ||| || |||||| Sbjct 15350 ACATTATCAATTAAT 15336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136358976870360