Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_009813.1 Length=48172 Score E Sequences producing significant alignments: (Bits) Value seq273 199 1e-46 >seq273 Length=32108 Score = 199 bits (220), Expect = 1e-46 Identities = 460/684 (67%), Gaps = 32/684 (5%) Strand=Plus/Minus Query 39826 AATGGATCGTTTAGAAAAACGGTAGATATGCGGACAATTAATGCGAAGTGGTTGAAAGAA 39885 |||||| | | ||||||| |||||||||||||| | ||| ||| ||| |||||||| Sbjct 22233 AATGGAACATATAGAAAAGGTGTAGATATGCGGACCTTGAATAAGAAATGGCTGAAAGAA 22174 Query 39886 AACAAGCCTTTCTTTAAGAACTCGGACAGAGGTTTTATGGAATTTGAATTAGCAAGAAGA 39945 || || | || || || || || || ||| |||| ||||| ||||||| || | | Sbjct 22173 AATAAACAATTTTTCAAAAATTCTAACCGAGATTTTTATGAATTCGAATTAGAAAAACGG 22114 Query 39946 ATACAGAAACGGCGAGGAAAGGTAGTTTCTGGAATTGAAAAATATCTTG-ATTACCGTGC 40004 ||| | || ||| |||||||| || |||| |||||||| | ||||| |||| | ||| Sbjct 22113 ATAAAAAACCGGAATGGAAAGGTCGTACCTGGTATTGAAAAGT-TCTTGGATTATCATGC 22055 Query 40005 TATCAACAAAATCCCAGAAGGAGTAGGAATAGTTCGCTTTCAGAATTGGATCATTAAGAA 40064 || |||||||| || |||| ||||||| ||| |||||||||||| | ||||| || Sbjct 22054 CATTAACAAAATTCCGAAAGGTATAGGAATGGTTAAATTTCAGAATTGGGTTATTAAAAA 21995 Query 40065 TAAAGTGGATTTTAGCTACTATCTGGATTATCTAAACCTAATGCGAGACTTAAATAT--- 40121 |||| | || | ||||| | || ||||| || | | ||| |||||||| Sbjct 21994 TAAAATCAATATGCTTTACTACTTCGACTATCTGAATATGTTAAAAGATTTAAATATAGA 21935 Query 40122 TGCAATCGATAGCGAAAACATAATTATGCCTAAAAATTTAGTAATAGCTCATGATAACGC 40181 | | | | | | || ||||||| ||||| ||||| || ||| |||||||| || Sbjct 21934 TCCTACAGGTGATGCTAATTTAATTATTCCTAAGGATTTAAAAAAAGCACATGATAATGC 21875 Query 40182 GGTCAAATTACTGTACCAAATGAAACATGAAGTTGA-AGAACA-ACAATATAAAATGAGA 40239 || |||| ||| | ||| | ||| ||| | |||| | | ||| |||| | | Sbjct 21874 TGTGGAATTGCTGAATCAATTAAAAATCGAACAAAAGAGAAAAGAAAATGAAAAACTACA 21815 Query 40240 -------TTTGAGAA------GATAAAAGACTTAGAA--AAAACGA----TAGATAATTA 40280 | ||| | | | ||| |||| || | || || | | |||||| Sbjct 21814 GCAAGAGTACGAGGAAACGTTGGTCAAACGCTTAAAACTAGAAAGAGTTGTTGGTAATTA 21755 Query 40281 CGCTTTTATTGTCCCT--AAACAAGCTTCT-GATTTATTAACAGAAGGCAAAGCATTAAG 40337 | || | | ||| | ||| || | || || | |||||| ||||||||| Sbjct 21754 TGAATTCAAAATACCTCGAGACA---TTATCGAAATAATCCAAGAAGGTAAAGCATTACA 21698 Query 40338 TCATTGTGTGGGTGGTAGTAATTATATTAAACAACACATTGAAGGGAAAACAACGATTAT 40397 ||||||||| |||||||| |||| ||| ||| |||| | | ||| ||||||| ||| | Sbjct 21697 TCATTGTGTAGGTGGTAGCCATTACATTGAACGTCACAGTAAGGGGCAAACAACTATTGT 21638 Query 40398 TTTTGTTCGTGATAAGCAGTACTTAGAAAAGTCATTGTATACACTTGAATACAAAAATGG 40457 ||||||||| | ||| | || ||||| | | || || || | ||||| |||| || Sbjct 21637 ATTTGTTCGTAAGAAGAACGACACAGAAACGCCGTTTTACACCTTGGAATATCAAAAAGG 21578 Query 40458 CCAAATTTACCAACTGAGAGGTAA 40481 || ||| ||| |||||||||| Sbjct 21577 GCATATTGTTCAATTGAGAGGTAA 21554 Score = 80.6 bits (88), Expect = 8e-11 Identities = 132/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 45955 AAATGAATATCCAAGAAATAGAAGTAAGCAAAATTAAT-CCGGCTGCATATAATCCGCGT 46013 ||||| |||| || |||| ||| | | || | |||| ||||| | ||||||||| | Sbjct 16849 AAATGCATATTGAAAAAAT-GAAATTATCAGATTTAAGGCCGGCGGAATATAATCCAAGA 16791 Query 46014 ATAGATTTACAGCCCGACGATCCAGAATATCaaaaattaaaaaaaTCAATTGAAGAATTT 46073 || | || | || | |||||||| ||||| | ||| |||||||| ||||||| Sbjct 16790 GTAAAATTGAATCCAGGTATGGCAGAATATGAAAAACTTAAACAATCAATTTTAGAATTT 16731 Query 46074 GGCTATATTGACCCACTGATTTGGAATGAAAGAACTGGTAATTTAGTCGGTGGCCATCA- 46132 |||| | |||| || | |||| ||| ||| || || || || || ||||| ||||| Sbjct 16730 GGCTTTGTTGATCCTCCCATTTTTAATAAAAATACAGGAAACTTGGTTGGTGGACATCAA 16671 Query 46133 -GCGTTA 46138 |||||| Sbjct 16670 CGCGTTA 16664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154018608299376