Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq10 140 8e-28 seq48 131 4e-25 seq558 113 1e-19 >seq10 Length=3877145 Score = 140 bits (154), Expect = 8e-28 Identities = 172/234 (74%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | ||||| || || || ||||| || || |||| Sbjct 2844588 CCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGAC 2844529 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||||||||| | |||||| || || ||||| | ||| |||||| |||||| Sbjct 2844528 AAGGTACGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGA---TCTGGG 2844472 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||||||||| ||||| || || ||||| || ||||| |||| |||| | ||| Sbjct 2844471 GGGATTCCTTCTTTGTCCTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCA 2844412 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || || ||||| ||||| || |||| ||||| ||||| || |||||| || Sbjct 2844411 ACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTTG 2844358 Score = 140 bits (154), Expect = 8e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || ||||||||||||| || |||||||| || || || ||||| || ||||| Sbjct 2844781 TTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAA 2844722 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| ||| |||||| |||||||||||| ||||| || ||||| ||||| || || Sbjct 2844721 AATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTTAGCTTTGACATT 2844662 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| |||| | || || || | ||||| || || || |||| ||| ||||| Sbjct 2844661 CTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGAC 2844602 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 2844601 GAAAATCTGCAT 2844590 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | | ||| | ||||| || ||| ||||||||||| ||||| | Sbjct 2845272 CCACCACGGAGACGCAATACCAAATGAAGAGTTGATTCCTTTTGGATATTGTAGTCCGAC 2845213 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||||||||| || |||||||| || || ||||||| ||| |||||| ||| Sbjct 2845212 AGGGTGCGTCCGTCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGA 2845153 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||| |||||||| || || || || || |||| |||| | || ||| Sbjct 2845152 ATGCCCTCCTTATCTTGGATTTTGGCCTTAACATTCTCAATAGTATCGGAAGGCTCAACT 2845093 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || || || || |||||||| ||||| || || || ||||| Sbjct 2845092 TCCAAGGTTATGGTTTTACCGGTCAGGGTCTTCACAAAGATTTGCAT 2845046 Score = 114 bits (126), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | | ||| | |||| || || |||||||| || ||||||| Sbjct 2845044 CCACCACGGAGACGCAATACCAAGTGAAGTGTTGACTCCTTTTGGATGTTGTAGTCGGAC 2844985 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||||||||| || ||||| || || ||||| || | ||| ||||| ||||||| Sbjct 2844984 AATGTGCGTCCGTCCTCCAATTGCTTGCCAGCGAAAATTAAACGTTGTTG---ATCTGGG 2844928 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || ||||| || || ||||| ||||| |||||||| || | ||| | ||| Sbjct 2844927 GGAATACCCTCTTTGTCTTGAATTTTTGCTTTAACGTTTTCGATTGTATCAGAAGGTTCA 2844868 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || || || |||| || || ||||| || ||||| Sbjct 2844867 ACCTCCAGAGTAATTGTTTTTCCCGTCAATGTTTTAACGAAGATTTGCAT 2844818 >seq48 Length=1730007 Score = 131 bits (144), Expect = 4e-25 Identities = 146/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||||| | ||||| || ||||| ||||||||||| |||||| Sbjct 776862 TCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACCATCTTCCAATTGTTTTCCGGCGAAG 776803 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| |||||||||| |||||| || ||||| || || ||||| ||||| || ||| Sbjct 776802 ATCAAACGCTGTTGATCTGGTGGGATACCCTCTTTGTCTTGAATTTTAGCTTTGACATTT 776743 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | || || || | ||||| ||||| || || | || |||||| Sbjct 776742 TCGATGGTGTCAGATGGCTCGACCTCTAAGGTGATGGTCTTACCAGTTAATGTTTTGACG 776683 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 776682 AAAATCTGCATTCTG 776668 >seq558 Length=79715 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| || | ||||| || || || ||||||||||| || || Sbjct 66372 TCCTTCTGAATGTTGTAGTCTGCCAATGTGCGACCATCCTCCAATTGTTTTCCGGCAAAA 66313 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || | |||||||||| ||| || ||||| ||||| |||||||| ||||| || | | Sbjct 66312 ATTAAACGCTGTTGATCTGGTGGAATCCCTTCCTTATCTTGGATTTTGGCTTTAACATGT 66253 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| ||| | ||| || || || ||||| || || || || || || || ||| Sbjct 66252 TCGATAGTATCCGAAGGTTCAACCTCAAGAGTGATGGTTTTACCCGTAAGGGTTTTTACG 66193 Query 288463 AATATCTGCATT 288474 || || |||||| Sbjct 66192 AAAATTTGCATT 66181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179570182997816