Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq162 86.0 1e-11 >seq162 Length=508180 Score = 86.0 bits (94), Expect = 1e-11 Identities = 287/443 (65%), Gaps = 8/443 (2%) Strand=Plus/Minus Query 297269 ATATTAGTCGACCAACCGGTACCGATTCCACTCGAACCATTCACCAGAATGCTCGGAATA 297328 || || || ||||||||||| || || ||| | ||||||||| | || | || ||| Sbjct 426190 ATCTTGGTGGACCAACCGGTGCCAATACCATCAGCACCATTCACTAAAACCATTGGTATA 426131 Query 297329 ACAGGCACATAATACTCTGGTTCGATCTTGTCACCGTCATCATACAGATATTTCAGAAGA 297388 | || | ||| ||| ||||| ||||| | || |||||| ||| | || | Sbjct 426130 ATCGGTATATACCACTGGGGTTCAATCTTTTGGCCATCATCAACTTCGTATGTGAGCAAT 426071 Query 297389 TTATCGTCCGTATCGACGAAAACCTGTCGAGTCTGAGGGTTCAGTTTTGTGAAAATATAT 297448 ||| || | | | ||| | ||| || || || | ||||||||||| Sbjct 426070 GGATCATCGGCAGGGTGGAATATGAGTCTCGTTAATGGCGACATTAAAGTGAAAATATAA 426011 Query 297449 CGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAAC 297508 || || ||||| ||| ||||||||||| | | || ||||||||| || |||| Sbjct 426010 CGAGCGCTCGCACAATCTTTACCACCCTGTAGACGCGTACCGAACTGACCACGCGGCTCG 425951 Query 297509 AACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGC 297568 | | || || ||||| || ||||| | || || | || || ||||| | ||| Sbjct 425950 AGTAAATTAATATTATTTGAGCCAACATAGTTTTGCGCCAAATTGACTATGGTGGCCTGC 425891 Query 297569 AGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCA 297628 || || || ||||| || |||||| || || || |||| || || ||| Sbjct 425890 AGTGACATCTCTCCATGATGGTAGGCGGACATTTCAGCCACAGAACCAGACAATTGCGCA 425831 Query 297629 ACCTTCACGT--CGGTCGTCAAATTGCGCTTGAA--AGCTGAATATATCACTTTCCGTTG 297684 || ||||| | || | ||| || |||||||| || |||| ||| ||||| ||||| Sbjct 425830 ACTTTCACTTCACGTTTGTC--GTTACGCTTGAAACAGGTGAACATA--ACTTTGCGTTG 425775 Query 297685 AGAAGGTTTGAAACCATCAACGA 297707 ||| || |||||||| |||| Sbjct 425774 GCCAGGCTTAAAACCATCCACGA 425752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102801264018200