Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq71 134 1e-26 seq10 105 7e-18 seq558 102 8e-17 >seq71 Length=1348405 Score = 134 bits (148), Expect = 1e-26 Identities = 522/813 (64%), Gaps = 23/813 (3%) Strand=Plus/Plus Query 154626 TATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTC 154685 |||| |||||||| | ||||||||||| ||| ||| ||||| | || | |||||| Sbjct 495597 TATTCAACAATTTCGGTACACAAATTACTACATTTAATCGTGCCAATATTCTGCTGATTA 495656 Query 154686 GATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTT 154745 || | ||||| || ||||| ||||| |||||||| ||||| || || || || | | Sbjct 495657 CTCTTTCTATTGCAAGCATCTTTATACAACATGTACGGTGTGCCGGTCTCTACCTGCGAT 495716 Query 154746 TCAATAATTGTGCGAA--ACAGACTTCGCGCCTCAACTTGACAAGTAAATCGATTTTCGC 154803 |||||||| || || | |||||| | || | ||| | | || || ||| Sbjct 495717 TCAATAAT--GGCAAACCAAAGACTTTGTGCTTTAACCTTCTTATTAGCACGTCCTTCTT 495774 Query 154804 TCTCATATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGAC 154863 ||||||| || || | ||| || |||||| || | || || ||||| |||| Sbjct 495775 GTTCATATTTCTCATATAATTTCTCGAACTCTTCACCCCATACTTCATGTAAACCCGGAC 495834 Query 154864 AGCGGTCGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAAT 154923 | | |||||||| | ||||| ||| | || || ||| |||||| | || Sbjct 495835 ACTTATGTGGACACATTAGCGACCAGTCTTCATCGGCTTCGACACGTCGCATAAATAGAT 495894 Query 154924 CCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTC 154983 |||| | |||||| || || || ||||| | || | ||||| ||| | ||| Sbjct 495895 CCGGTATCCACAAGGCATAGAATAAATCTCTTGCGCGATGCTCTTCTTTGCCAGTATTTT 495954 Query 154984 GCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCG 155043 ||| |||| |||||| || | | ||| || ||||| || || | ||| | ||| | | Sbjct 495955 TCTTCAAATCCAAAAACTCGAAAACGTCCGCATGCCATGGTTCCAGATAGATGGCAAAGG 496014 Query 155044 CGCCTTTGCGTTT---TCCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCA 155100 |||| || || || |||||||| || | ||| | |||||| |||| | || Sbjct 496015 CGCCGGGACGCTTACCGCCACCTTGATCAACATAACGTGCCACATTATTAAACACTCTCA 496074 Query 155101 ACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCCACGTATCGCGCTGC----CGCGA 155156 || ||| | | || ||| ||||| || || || || || ||| |||| Sbjct 496075 GCATTGGCACTAAACCATTGGAAGTGCCATTTGTACCCGCAATTGCAGTGCCTTTCGCGC 496134 Query 155157 GCACGCGCTTTATGAACATTAACGCCCAAACCTCCGCCGTATTTAGATATTTGCGCACAG 155216 | | || ||| ||||| | || | ||| || | |||| || || |||||| Sbjct 496135 GTATGC----AATGCACATTCAAACCAATACCGCCTGCAGATTTGGAGATCAATGCACAG 496190 Query 155217 ---TCCGCCAAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAA 155273 | ||| | || | | || || | || || || || || | || || Sbjct 496191 TGATGTGCCGATGT---GAAAATACCGTCAATTGAATCGTCCACCATGGTAAGCAGAAAG 496247 Query 155274 CACGAAGATAATTGAGGTTGAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTA 155333 ||||| || ||||| ||||| | | | || || |||| || || || |||||| Sbjct 496248 CACGATGACAATTGCGGTTGCTTGGTGGCAGCAGCGAATAGCGTTGGTGAGGCATGTGTA 496307 Query 155334 AACATTTTG-TTGGCGGTTAAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTG 155392 || || | | | |||||||| ||||| || ||||| ||||| || ||| || Sbjct 496308 AA-ATAACGCTCAGAAAGCAAGTTGTATGTTTCAATTGCGGCATCAATATCTTCACCATG 496366 Query 155393 TATACCGATCGCCACGCGCATCAGCATGTGTTG 155425 ||||||||| || |||||||| | ||||||||| Sbjct 496367 TATACCGATGGCAACGCGCATTAACATGTGTTG 496399 Score = 132 bits (146), Expect = 5e-26 Identities = 464/708 (66%), Gaps = 26/708 (4%) Strand=Plus/Plus Query 153807 TTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCCATGTCAATCAAGTTT 153866 || ||||| ||||| ||||||||||| ||||| ||||| || ||||| | || || || Sbjct 494775 TTGAACGATTGGCTTTGATCGATGAATGCGCCACGATCTGCAGCCATTTTGATGGAGGTT 494834 Query 153867 TT-ACTGCTCATTTCCCACACAGTTTTGTA--GACGGCTTTAATGTCGTCGGGTATGCGA 153923 || |||| || ||||| ||||| ||||| || || | |||| |||| |||| Sbjct 494835 TTCACTGAA-ATCTCCCAAACAGTCTTGTACAGATCGCGTATATGTT-TCGG-TATGGTT 494891 Query 153924 TCAATTTTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCGCATGTGGTCGTCGTAC 153983 ||||| || || | | || | | |||||||| ||| ||| | || || || Sbjct 494892 TCAATGTTTTGTATAGAACCACGATGTGTTATAATGGTATTTTTCATATCATCATCCCAC 494951 Query 153984 AAATTTAG-TCGACATAAATCTTCAACCAAGTGCTGGTTAATTACTTGAAAATCGCCGGC 154042 ||| | ||| | ||| | |||||| || || | ||||| || || || | Sbjct 494952 AAACCCAACTCGGTG-AGATCGCGTAACAAGTGATGATTGACAACTTGGAATTCACCCGA 495010 Query 154043 CAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATTCGTTGTTGCCTAA 154102 | || || || ||| | ||| ||| |||| || ||||| || || ||||| | Sbjct 495011 AAGCACACGACGTGTATAAATATTCGAAGTGTACGGTTCAAACGACTCATTATTGCCCAT 495070 Query 154103 TATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGTTTCGCAAACCGTG 154162 ||||| || |||| || || ||||| || | |||||| ||||| || | ||| || Sbjct 495071 AATTTGTGCGGTAGAAGCAGTTGGCATCGGTGCAAGCAACAATGAGTTGCGTACACCATG 495130 Query 154163 TTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACA----AGTTGGTAGGTTGCACGT 154218 || || | || || || | ||| ||||| | |||||| ||| | | Sbjct 495131 TTGCTTTATTTTCTCCTTCAATTCGGTCCAGTTCCAGAGATCAGTTGGC--GTTTTA--T 495186 Query 154219 TCCACATGTCGTATTGCAAAACACCCAAACTCGCCGG---ACTGTCACTATAACTAGAGT 154275 ||||||||| ||||| | | |||| || | || || ||| ||| || | | Sbjct 495187 CCCACATGTCATATTGTAGTATACCCTTGCTGACTGGTGAACCTTCA-TATGTCTCG--T 495243 Query 154276 ACGGCCCGTTCAGTTTT--GCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTATACGGT 154333 | | || | | |||| ||||| || ||||||||||| || || ||||||| | || Sbjct 495244 AAGTGCCAT--ATTTTTCAGCCAATTCACAACTGGCTTCCAATGCGCCATAGTAAATAGT 495301 Query 154334 TTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAATCCCAATAT 154393 |||| ||||||| || |||| | || | ||||||||||| || || | || || Sbjct 495302 TTCGAATATTTGTTGATTCAACAAGTATGCCTCATCACTTTCGTATGGAAAACGCATTAA 495361 Query 154394 ACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCAACGGGTCTGTGTTTTAAATTCGA 154453 | || || ||||| | ||||| ||||| | |||| ||| | ||| |||||||| Sbjct 495362 AATTAAGGCGTCGGCAAAACCTTGTATGCCAATACCAATGGGACGATGTCGCAAATTCGA 495421 Query 154454 TTCTTTGGCAGCCTCCAGAGGATAATAATTGATATCGATAATTTTATT 154501 || ||||| || | ||||||| ||||| || || ||||| || Sbjct 495422 TTTCTTGGCCTCCGGTAAGGGATAATGATTGACGTCTATGATTTTGTT 495469 >seq10 Length=3877145 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||||| || || || || || ||||||||||| | | ||| || |||| Sbjct 2844574 AAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAAGGTACGTCCGTC 2844515 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| || || || |||||| | || | || || || || || || ||||||||||| || Sbjct 2844514 TTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTC 2844455 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 || | | || ||||| ||| || | ||||| | || || || | ||| | || Sbjct 2844454 CTG-AATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGG 2844396 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||||| ||||| || || ||||| ||||||||||| Sbjct 2844395 TCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 2844359 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || || | || |||| ||| | || ||||| || ||||| || || || | Sbjct 2844817 ACCACCACGTAAGCGTAGAACTAAATGTAATGTGGATTCCTTCTGAATATTATAGTCGGA 2844758 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || | ||| ||||| || |||| | || || || || || || Sbjct 2844757 CAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGG 2844698 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 |||||||| || ||||| ||||| ||||| ||| ||| | ||||| | || | Sbjct 2844697 GATTCCTTCCTTATCTTGAATTTTA-GCTTTGACATTCTCAATAGTATCGGAAGGCTCAA 2844639 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | ||| | ||| || || ||||||||||| |||||||| ||||| Sbjct 2844638 CCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 2844590 >seq558 Length=79715 Score = 102 bits (112), Expect = 8e-17 Identities = 153/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| |||| || | || || || || ||||||||||| ||||| | ||||| | || Sbjct 66394 AAGGACTAAGTGTAATGTAGACTCCTTCTGAATGTTGTAGTCTGCCAATGTGCGACCATC 66335 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || | || || |||||| |||| | ||||| || || || ||||| ||||| || || Sbjct 66334 CTCCAATTGTTTTCCGGCAAAAATTAAACGCTGTTGATCTGGTGGAATCCCTTCCTTATC 66275 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | |||| ||||| ||| || | ||||| | || || || | ||| | || Sbjct 66274 TTGGA-TTTTGGCTTTAACATGTTCGATAGTATCCGAAGGTTCAACCTCAAGAGTGATGG 66216 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 | || || || | ||||||||||||||||||||| Sbjct 66215 TTTTACCCGTAAGGGTTTTTACGAAAATTTGCATT 66181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499609999739680