Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_010363.1 Length=18762 Score E Sequences producing significant alignments: (Bits) Value seq1481 96.9 4e-16 >seq1481 Length=7831 Score = 96.9 bits (106), Expect = 4e-16 Identities = 203/291 (70%), Gaps = 15/291 (5%) Strand=Plus/Minus Query 13186 TAACCACCCCGCACGCTTAGACGTTTGTGAGCGATAATAGGCTTGCTTGTAA-ACTTCTC 13244 |||||| || | || || | |||||||||||||| || ||||| | ||| ||||| Sbjct 897 TAACCATCCTGATCGTTTCGTAGTTTGTGAGCGATAGTATGCTTG-TGATAATTTTTCTC 839 Query 13245 CATTAGGTGTCGTATAGTAGAATTGAACCCCGTCAATTGCT--TCATTAGGGTTTCCCGC 13302 | ||||| || |||||| || ||||| || ||||||||| || || | | || || Sbjct 838 CCTTAGGAGTTATATAGTTTAACTGAACACCATCAATTGCTTGTCCTT--GAATACCTGC 781 Query 13303 ACAACCATTAACAAGGTCATTTTTATTTCCTTGATTAACCCAACCAAGCCAACCCGATTT 13362 |||||| || |||||||||||||||| ||| |||||| | | || | || ||| Sbjct 780 TACACCATTCACTGTATCATTTTTATTTCCTTTATTTACCCAAGCTAACC-AGCCACTTT 722 Query 13363 GA-CAGTATGAACACGGTATCTTAAAGAACCATGTGACACGCTTGCAAATAA--CATATC 13419 || | ||||||||||| || ||| | || | | | ||| | |||| ||| || Sbjct 721 GAGCTGTATGAACACGATA-CTTCATTTCCCCTTTATCTACCTT-AATATAAAGCATGTC 664 Query 13420 ATGCTCATGATTAGAATTTCCAGCAAATCCATTTCCGTTTGAGTTGTTAAA 13470 ||| | | |||||| || || ||||| |||| | || | |||||||| Sbjct 663 ATGTTGACGATTAGGATAACCTGCAAAACCAT---CATTAGTATTGTTAAA 616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 59916139579100