Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_011104.1 Length=39989 Score E Sequences producing significant alignments: (Bits) Value seq1321 161 3e-35 >seq1321 Length=4872 Score = 161 bits (178), Expect = 3e-35 Identities = 298/426 (70%), Gaps = 12/426 (3%) Strand=Plus/Plus Query 19788 GGTAAGCGGGCACACACCTATATCTGGTGGCAGAATATCGACAAC-ACCAATTTGGCCAA 19846 ||||| || || || || ||| | |||||||| || || | | || || || | || Sbjct 2128 GGTAAACGAGCGCATACGTATGTATGGTGGCAAAACGTCCTTACCTACGAAAATG-CAAA 2186 Query 19847 GCAAGTACTAGATCATTTCTTGCCTGAGATTCAAACACCAAAAGGGTCGATTGTTGCGCT 19906 |||||| ||||| | || || ||| | ||||||||||||| || || ||||| || | Sbjct 2187 ACAAGTATTAGATTACTTTTTACCTAAAGTTCAAACACCAAAGGGATCAATTGTCGCCTT 2246 Query 19907 TGACTATGAGGCCGGA--TCAACCAACACG-GCAACCTTGCTGTGGGCACTCGACTATAT 19963 || || | ||| |||| | || | ||| ||| ||||| | |||||||| Sbjct 2247 AGATGCGGAAGACGGCGTTCAATCGACGGATGTAAC---GCTATGGGCGTTAGACTATAT 2303 Query 19964 CCGCGATGCTGGGTACACGCCAATGCTCTACGGTTATAAGAGCT-TCTTGGTTAACCACA 20022 | || ||||| || || || ||||| ||||| || || | | |||| || | | | Sbjct 2304 CAAAGAGGCTGGATATACACCGATGCTTTACGGATACAAAGGGTATCTTACTTCATCTTA 2363 Query 20023 TCAACTTGTCACAGATTGCCAGCCGCTATCAGTTATGGCTCGCGGAATATCCTGATTACA 20082 | | || |||| ||||| | ||||| |||||| | || |||||||| ||||| Sbjct 2364 TGAT-TTATCACGAATTGCAAAGAAGTATCAATTATGGATGGCAGAATATCCAGATTATG 2422 Query 20083 ATGTCACTACCGTA-CCGAATTACAATTATTTCCCTAGTTTTGACAATGTAGGTATCTTC 20141 | || || ||| || || |||||||||||||| ||| ||||| ||| | ||||| || Sbjct 2423 AAGTGAC-ACCTTATCCAAATTACAATTATTTTCCTTCATTTGAAAATATCGGTATTTTT 2481 Query 20142 CAGTTCACTTCAACTTATCGCGCTGGCGGCCTTGATGGTAACGTTGATCTAACTGGCATC 20201 |||||||| ||||| || || || || || ||||||||||||||| |||| || || Sbjct 2482 CAGTTCACGTCAACCTACGTTGCAGGAGGGCTAGATGGTAACGTTGATTTAACAGGTATT 2541 Query 20202 ACTGAT 20207 |||||| Sbjct 2542 ACTGAT 2547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127834740935064