Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq15 84.2 2e-11 >seq15 Length=3281712 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAAC 108525 ||||||| |||||| | || || ||||||||||| || || || || ||||||||| Sbjct 1168004 TGGGTGCGCGATCATCGTGTGCATCACAAGTACTCCGAAACCGATGCTGATCCACACAAC 1168063 Query 108526 GCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGAC 108585 |||| | || |||| ||| | ||||| || ||| | |||||| ||| | || || Sbjct 1168064 TCCAATCGTGGTTTCTTCTTCGCACACGTCGGCTGGTTAATGATGCTGAAGCATCCGGAA 1168123 Query 108586 GTGATCTCGGC-CGGTCGAAAAATGGACATGACGGACATATACTCCGATCCGGTGGTAGT 108644 || | || | ||| || || ||||||||| || || ||||| || || Sbjct 1168124 GT-TTTACGTCGCGGCCGTCAATTGGACATGAGTGATGTAATGAATGATCCCGTTGTGCA 1168182 Query 108645 GTGGCACACCAAGTACTTTATTCCTCTTAAAATTTTGCTCTGTTTTGT 108692 || || || ||||| |||||| | |||||| ||||||| ||||| Sbjct 1168183 GTTCCATCAGAAATACTTCATTCCTTTGAAAATTCTGCTCTGCTTTGT 1168230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381746874286368