Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq10 123 2e-23 seq558 114 9e-21 seq48 111 1e-19 >seq10 Length=3877145 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || || | || ||||||||| | || || || || || || || || ||| Sbjct 2844816 CCACCACGTAAGCGTAGAACTAAATGTAATGTGGATTCCTTCTGAATATTATAGTCGGAC 2844757 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | || || || |||||||||||| | |||||||| ||||| || ||| Sbjct 2844756 AGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGG 2844697 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || |||||| ||| ||| | || ||||||||| | || || Sbjct 2844696 ATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTCAACC 2844637 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || |||||||| || |||| |||||| || ||||| |||||| Sbjct 2844636 TCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCATA 2844589 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || |||||||| || || || ||||| || ||||| || || | | |||| Sbjct 2845257 AATACCAAATGAAGAGTTGATTCCTTTTGGATATTGTAGTCCGACAGGGTGCGTCCGTCC 2845198 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || |||||||| || || | |||||||| ||||| || |||||| || ||||| || Sbjct 2845197 TCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGAATGCCCTCCTTATCT 2845138 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 |||||| || ||| | || ||||||||| | || || || ||||| |||||| Sbjct 2845137 TGGATTTTGGCCTTAACATTCTCAATAGTATCGGAAGGCTCAACTTCCAAGGTTATGGTT 2845078 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| ||||| || || ||||| ||||||||| Sbjct 2845077 TTACCGGTCAGGGTCTTCACAAAGATTTGCATA 2845045 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | | || || ||||||||||| || || ||||| |||||||||||| Sbjct 2845502 TGCCACCACGGAGACGCAATACCAAATGAAGGGTTGATTCCTTTTGGATGTTGTAATCGG 2845443 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | | | | |||| || |||||||| || || | |||||||| ||||| || || Sbjct 2845442 ACAAAGTACGTCCGTCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTG 2845383 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||| ||||| || || || || || |||| || || ||| ||| | Sbjct 2845382 GGATTCCCTCCTTATCTTGGATCTTAGCCTTAACGTTTTCGATGGTGTCGGATGGTTCGA 2845323 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || || ||||| |||||||| || || || || || || ||||||||| Sbjct 2845322 CCTCCAAAGTAATAGTTTTACCAGTAAGGGTCTTCACGAAGATTTGCATA 2845273 Score = 107 bits (118), Expect = 1e-18 Identities = 157/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGTCT 15024 ||| |||||||| ||||| || || || |||||||||||| || || | | ||||| Sbjct 2844571 AACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCG--GACAAGGTACGTCCGTCT 2844514 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | |||||| || || | || ||||| ||||| || || |||||||| ||||| Sbjct 2844513 TCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCC 2844454 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||| || ||| ||| |||| ||||||||| ||| || || | || ||||| Sbjct 2844453 TGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTC 2844394 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 || || |||| || || || || |||||||| || |||| Sbjct 2844393 TTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTTGGAAA 2844354 >seq558 Length=79715 Score = 114 bits (126), Expect = 9e-21 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 ||||| || | ||||| || || || |||||||| || || ||| || | || | Sbjct 66390 ACTAAGTGTAATGTAGACTCCTTCTGAATGTTGTAGTC--TGCCAATGTGCGACCATCCT 66333 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | |||||||| || || | || ||||||||||| || |||||| |||||||| || Sbjct 66332 CCAATTGTTTTCCGGCAAAAATTAAACGCTGTTGATCTGGTGGAATCCCTTCCTTATCTT 66273 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 |||||| ||| ||| ||| |||||||| | ||| || || | || ||||||| Sbjct 66272 GGATTTTGGCTTTAACATGTTCGATAGTATCCGAAGGTTCAACCTCAAGAGTGATGGTTT 66213 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| || || |||||||| ||||||||||| Sbjct 66212 TACCCGTAAGGGTTTTTACGAAAATTTGCAT 66182 >seq48 Length=1730007 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022 || || ||||| ||||| || || ||||| |||||||| ||| || || || | | Sbjct 776883 AACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCG--GACAAGGTGCGACCAT 776826 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| |||||||| || ||| | |||||||||||||| || ||| || || || |||| Sbjct 776825 CTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGGATACCCTCTTTGT 776766 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142 | |||||| ||| ||| |||| || || || || || |||||||| |||| Sbjct 776765 CTTGAATTTTAGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCTAAGGTGATGG 776706 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | ||||| || | ||||| || ||||| ||||| Sbjct 776705 TCTTACCAGTTAATGTTTTGACGAAAATCTGCAT 776672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357367729956020