Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_011801.1 Length=38934 Score E Sequences producing significant alignments: (Bits) Value seq884 91.5 4e-14 seq641 91.5 4e-14 >seq884 Length=19560 Score = 91.5 bits (100), Expect = 4e-14 Identities = 188/274 (69%), Gaps = 8/274 (3%) Strand=Plus/Plus Query 32855 TTAGTTGGTCGATTAACGAAAGATATTAATTTAAGAAAAACACAGAGTGGAATTTCAGTT 32914 |||||||| || |||||||||||||| ||||| | | || ||||| | ||||| Sbjct 817 TTAGTTGGACGTTTAACGAAAGATATAGATTTACGCTACACCGCAAGTGGTTCTGCAGTT 876 Query 32915 GGACTCTTTACTCTGGCAGTAAACAG--ACAGTAC-AGCAAAGACAAAGAACACAAAGAG 32971 ||| ||||||||| || || ||| | || ||| | | || || |||| ||| Sbjct 877 GGAAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAAC---GAGAA 933 Query 32972 GCAGACTTTGTCAGTTGCATTGTTTGGCGTAAGGGGGCTGAAATCCTATCACAGTACACT 33031 || || ||| ||| || | ||||||||||| ||||||| | | | || ||| Sbjct 934 GCGGATTTTATCAACTGTGTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATTATACT 993 Query 33032 CACAAAGGTTCAAGGATTGGGA-TTGATGGTCGTATCCAAACCAGAAATTACGAAGACAA 33090 | ||||| | | ||| ||| ||| ||| | || ||||| | ||||| || || | Sbjct 994 CGTAAAGGAAC-ATTATTAGGAGTTGTTGGCAGAATTCAAACTCGTAATTATGACAACCA 1052 Query 33091 GAATGGCCAAAGAGTTTATGTGACTGAAGTTGTT 33124 | |||||| | || |||||||||||||||||| Sbjct 1053 ACAAGGCCAACGTGTCTATGTGACTGAAGTTGTT 1086 >seq641 Length=27874 Score = 91.5 bits (100), Expect = 4e-14 Identities = 188/274 (69%), Gaps = 8/274 (3%) Strand=Plus/Minus Query 32855 TTAGTTGGTCGATTAACGAAAGATATTAATTTAAGAAAAACACAGAGTGGAATTTCAGTT 32914 |||||||| || |||||||||||||| ||||| | | || ||||| | ||||| Sbjct 27058 TTAGTTGGACGTTTAACGAAAGATATAGATTTACGCTACACCGCAAGTGGTTCTGCAGTT 26999 Query 32915 GGACTCTTTACTCTGGCAGTAAACAG--ACAGTAC-AGCAAAGACAAAGAACACAAAGAG 32971 ||| ||||||||| || || ||| | || ||| | | || || |||| ||| Sbjct 26998 GGAAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAAC---GAGAA 26942 Query 32972 GCAGACTTTGTCAGTTGCATTGTTTGGCGTAAGGGGGCTGAAATCCTATCACAGTACACT 33031 || || ||| ||| || | ||||||||||| ||||||| | | | || ||| Sbjct 26941 GCGGATTTTATCAACTGTGTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATTATACT 26882 Query 33032 CACAAAGGTTCAAGGATTGGGA-TTGATGGTCGTATCCAAACCAGAAATTACGAAGACAA 33090 | ||||| | | ||| ||| ||| ||| | || ||||| | ||||| || || | Sbjct 26881 CGTAAAGGAAC-ATTATTAGGAGTTGTTGGCAGAATTCAAACTCGTAATTATGACAACCA 26823 Query 33091 GAATGGCCAAAGAGTTTATGTGACTGAAGTTGTT 33124 | |||||| | || |||||||||||||||||| Sbjct 26822 ACAAGGCCAACGTGTCTATGTGACTGAAGTTGTT 26789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124458964316544