Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_012419.1 Length=21115 Score E Sequences producing significant alignments: (Bits) Value seq884 224 1e-54 >seq884 Length=19560 Score = 224 bits (248), Expect = 1e-54 Identities = 385/556 (69%), Gaps = 2/556 (0%) Strand=Plus/Minus Query 9435 TTTCATGTTGGCTATTGCAGTACCAAAACCTTGTGTACTATCTTTAGCTATCTTTTCTAA 9494 ||||||||| || | | | || || |||| ||| |||||||| |||| ||||| Sbjct 17206 TTTCATGTTAGCCAATCCGGTTTTAATACCTGCAGTAGAGTCTTTAGCAATCTGCTCTAA 17147 Query 9495 TGACTTAAGACCGCCACCACCCTCTTTATCCATTTTAACTAAGGCATCTTGGAACTGTCT 9554 || ||||| || ||||| || ||||||| || ||||| || | ||||| || | | Sbjct 17146 CGATTTAAGGCCTCCACCGCCTTCTTTATTCAATTTAATTAGAGAGTCTTGAAATTCTTC 17087 Query 9555 TACAGATATACTACCTGATGACAATCCTTCTTTTAATTCACCTGTTGTCATGCCCATTTC 9614 || || || ||| || | |||||||| | | ||| | || | ||||||| Sbjct 17086 AACTGAAATTGAACCATCAGAGAGACCTTCTTTCATCTGACCAGCAGTTAACCCCATTTG 17027 Query 9615 TTTTGCTAAGGCATTAAGGGTAGGTCCTAAACCACTGTTAATCATTGAGTTCCACGTTTG 9674 ||| ||||| || || || | || || |||||||||||||||||||||||||| ||||| Sbjct 17026 TTTCGCTAATGCGTTTAGAGCTGGGCCCAAACCACTGTTAATCATTGAGTTCCAAGTTTG 16967 Query 9675 CGCATCTACCTTACCATTTGAGAATGATTGAGATAACTGAACAACCGCACTATCAACCAT 9734 ||||||||| ||||||||||| |||||||| |||| ||| | | |||| | || ||||| Sbjct 16966 CGCATCTACTTTACCATTTGAAAATGATTGTGATAGCTGGATGATCGCATTGTCTACCAT 16907 Query 9735 CTGTGCATCCCCACCAAAACCTAGGATAGCATCATTCATTGCTTTAAATACGTCAACTGA 9794 || |||| ||||||||| || |||||| ||| ||| | ||| || | | |||| Sbjct 16906 CTCTGCAGACCCACCAAAGCCGAGGATACCATTATTTAAAGCTGCGAAAATCTGTTCTGA 16847 Query 9795 TAATCCCATATCATCTGTTGATGCTGTTAGCAACTGAACGTTACTCACTGCACTGTCTAA 9854 | ||| | |||| ||| || | | | || ||||| | | ||| |||||||| Sbjct 16846 TTTTCCTAAGTCATTTGTAGACGAAGCAATTAATTGAACACCTTTAATTGCGCTGTCTAA 16787 Query 9855 GGCTGTTGGTAACCCACGTGT-TGCTTCCTGTAGCTTATCCATGTTCTTGGTTATATCCC 9913 | ||| ||||| || | | |||| | ||| ||||||| |||| | | | || | Sbjct 16786 TGGTGTGGGTAATCCTTGAATACTCTTCTTTAAGC-TATCCATTGTCTTTGATGTTTCAC 16728 Query 9914 CAGTAGCTACACCCATGTTCTCAAAGGCACGTGTACTATTGTTTAATGTATCAATCCTAT 9973 || | | ||||| || ||||| |||| | |||||||| ||||| | | || Sbjct 16727 TAGCTGAAAAGCCCATATTTTCAAATACACGGTTTGCGTTGTTTAACGTATCTACGCGAT 16668 Query 9974 TTAATGCACCATCAAT 9989 | | || |||||||| Sbjct 16667 TGATAGCCCCATCAAT 16652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 67445254475208