Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_012530.1 Length=142111 Score E Sequences producing significant alignments: (Bits) Value seq1321 183 3e-41 >seq1321 Length=4872 Score = 183 bits (202), Expect = 3e-41 Identities = 412/609 (68%), Gaps = 10/609 (2%) Strand=Plus/Plus Query 87572 GTCTTAGCTGCTAAGGGGGATCAAGGTGTTGACTGGTCAGTATATCAAGGAGCCAATGGC 87631 || || |||||||| || |||||||| ||||| | ||| | | | || | | | Sbjct 1954 GTATTTGCTGCTAAAGGCGATCAAGGCGTTGATTTGTCTATTTGGAATGGGGATCAAGCA 2013 Query 87632 GTATTTGGTTACTCAACAGATAAGTTTGGTATCTCACAGATTGGTGGTTACAGCGGCTAC 87691 ||||||||| || ||||| || || ||||| |||||||| | | | ||| Sbjct 2014 ACATTTGGTTATGCACATGATAAATTCTCAATTTCACAAATTGGTGGGCAAAACAACTAT 2073 Query 87692 GGTATTTATGAGCAATCTACATATAGAACACAGGTTGCATCCTTAATTGCGGCGGGTAAA 87751 || |||||||| ||| ||| ||| | || || || ||||| |||||| Sbjct 2074 GGGATTTATGATCAAGTTACTTATTCTAGTCAAGTAGCTAGTACGATTGCTCAAGGTAAA 2133 Query 87752 CGAGCACATACATATATCTGGTGGCAGAATATTAACAAC-ACGAACTTGGCTAAACAAGT 87810 ||||| ||||| ||| | |||||||| || | | | ||||| || | |||||||| Sbjct 2134 CGAGCGCATACGTATGTATGGTGGCAAAACGTCCTTACCTACGAAAATG-CAAAACAAGT 2192 Query 87811 TTTAGACCATTTTCTGGCAGAGGTACAAACGCCAAAGGGTTCCATTGTTGCACTTGACTA 87870 ||||| | ||| | | | || ||||| |||||||| || ||||| || | || Sbjct 2193 ATTAGATTACTTTTTACCTAAAGTTCAAACACCAAAGGGATCAATTGTCGCCTTAGATGC 2252 Query 87871 TGAGG-CGG-GATCAACAAATACA-GCAACCCTAATGTGGGCACTTGACTATATTCGCGA 87927 || | ||| | |||| | | | ||| ||| ||||| | |||||||| || Sbjct 2253 GGAAGACGGCGTTCAATCGACGGATGTAACGCTA---TGGGCGTTAGACTATATCAAAGA 2309 Query 87928 TGCTGGTTACACACCCATGCTGTATGGGTATAAGAGCT-TCTTGATGAGCCACATTGATT 87986 ||||| || ||||| ||||| || || || || | | |||| | | || |||| Sbjct 2310 GGCTGGATATACACCGATGCTTTACGGATACAAAGGGTATCTTACTTCATCTTAT-GATT 2368 Query 87987 TGGCACAAATTGCTCGTCATTATCAGCTATGGCTTGCAGAGTATCCCGATTACAATGTTA 88046 | ||| |||||| | ||||| ||||| | ||||| ||||| ||||| | || | Sbjct 2369 TATCACGAATTGCAAAGAAGTATCAATTATGGATGGCAGAATATCCAGATTATGAAGTGA 2428 Query 88047 CAACTGTTCCAAATTATGGGTACTTTCCAAGTTTCAACAATGTCGGTATTTTTCAGTTTA 88106 || || ||||||||| || ||||| || | ||| |||||||||||||||| | Sbjct 2429 CACCTTATCCAAATTACAATTATTTTCCTTCATTTGAAAATATCGGTATTTTTCAGTTCA 2488 Query 88107 CATCTACTTACCGAGCAGGCGGTCTAGATGGTAACATTGACTTAACTGGTATTACTGATG 88166 | || || ||| ||||| || |||||||||||| |||| ||||| |||||||||||| Sbjct 2489 CGTCAACCTACGTTGCAGGAGGGCTAGATGGTAACGTTGATTTAACAGGTATTACTGATA 2548 Query 88167 CTGGTTATA 88175 |||||||| Sbjct 2549 ATGGTTATA 2557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 454595535215520