Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq71 233 2e-56 seq48 127 2e-24 seq10 118 1e-21 seq558 98.7 9e-16 >seq71 Length=1348405 Score = 233 bits (258), Expect = 2e-56 Identities = 903/1399 (65%), Gaps = 41/1399 (3%) Strand=Plus/Minus Query 123294 GGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTA 123353 ||||| | || |||||||| ||||| ||||| | || || | ||| ||||| |||| Sbjct 496018 GGCGCCTTTGCCATCTATCTGGAACCATGGCATGCGGACGTTTTCGAGTTTTTGGATTTG 495959 Query 123354 AAACGCAACATGGGGGCGGAAGAAAAGAAA---GCCCGCGATTTGTTGTACGCTTTATGG 123410 || | || || ||| ||||| || | || | ||||| || || || || ||| Sbjct 495958 AA--GAAAAATACTGGCA-AAGAAGAGCATCGCGCAAGAGATTTATTCTATGCCTTGTGG 495902 Query 123411 GTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCC 123470 |||| ||| | ||||||||||| || ||| ||| | | |||||||| |||||||| Sbjct 495901 ATACCGGATCTATTTATGCGACGTGTCGAAGCCGATGAAGACTGGTCGCTAATGTGTCCA 495842 Query 123471 GATCGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAA 123530 || |||||| || || || || | || | |||| || | || || | | || Sbjct 495841 CATAAGTGTCCGGGTTTACATGAAGTATGGGGTGAAGAGTTCGAGAAATTATATGAGAAA 495782 Query 123531 TACGAGCGCGAAGGCAAACAGGTTAGTCAG---GTTCCGGCAC---GTGATTTGTTCAAA 123584 || || | ||||| || | || | || ||| |||| || || ||| Sbjct 495781 TATGAACAAGAAGG---ACGTGCTAATAAGAAGGTTAAAGCACAAAGTCTTTGGTTTGCC 495725 Query 123585 TTTATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGC 123644 ||||| ||| | || || || ||||| || ||||||||| | || ||||| || ||| Sbjct 495724 ATTATT---GAATCGCAGGTAGAGACCGGCACACCGTACATGTTGTATAAAGATGCTTGC 495668 Query 123645 AACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAA 123704 || || || | |||||| || | || || || |||||||||||| | || ||||| Sbjct 495667 AATAGAAAGAGTAATCAGCAGAATATTGGCACGATTAAATGTAGTAATTTGTGTACCGAA 495608 Query 123705 ATTATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGAT----TTG 123760 ||| | ||||| || |||| | || || || || ||||| || || || ||| Sbjct 495607 ATTGTTGAATATTCCGCACCCGACGAGGTAGCTGTTTGCAATTTAGCCTCAATAGCATTG 495548 Query 123761 --CGTGAATCGTTGCGTCG---AAAACGGCGCTTTTAATTTCCAAACG-CTCAAACGCAT 123814 | || || || | | |||||| | | | ||| ||||| || ||| | Sbjct 495547 AACATGTAT-GTCACACCAGATAAAACG----TATGACTTT--AAACGGCTTAAAGAAGT 495495 Query 123815 AACAAAAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGA 123874 ||||||| ||| |||||||||||||| || || || ||| |||||| || Sbjct 495494 CACAAAAATTGTTACGCGTAATTTGAACAAAATCATAGACGTCAATCATTATCCCTTACC 495435 Query 123875 GGAAGCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGC 123934 ||| || || |||||| ||| | || | || | ||||| ||||| || || Sbjct 495434 GGAGGCCAAGAAATCGAATTTGCGACATCGTCCCATTGGTATTGGCATACAAGGTTTTGC 495375 Query 123935 CGACGCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATAC 123994 |||||| || | | |||| | || |||||||| || || ||| | ||| | ||| Sbjct 495374 CGACGCCTTAATTTTAATGCGTTTTCCATACGAAAGTGATGAGGCATACTTGTTGAATCA 495315 Query 123995 GCAAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGC-GAAAA 124053 |||||| |||||| ||||| || ||||| ||||| || || || ||| | || ||||| Sbjct 495314 ACAAATATTCGAAACTATTTACTATGGCGCATTGGAAGCCAGTTGTGAATTGGCTGAAAA 495255 Query 124054 TTCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACG 124113 | | ||| | ||||| | || | || || | ||| ||||| | || || | Sbjct 495254 AT-ATGGCACTTACGAGACATATGAAGGTTCACCAGTCAGCAAGGGTATACTACAATATG 495196 Query 124114 ACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATAT 124173 |||||||| || || || || || | ||| |||||| || || || | ||| Sbjct 495195 ACATGTGGGATAAAACGCCAACTGATCTCTGGAACTGGACCGAATTGAAGGAGAAAATAA 495136 Query 124174 CGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTC 124233 | || ||| | || ||||| ||||| | || ||||| || || | || || | Sbjct 495135 AGCAACATGGTGTACGCAACTCATTGTTGCTTGCACCGATGCCAACTGCTTCTACCGCAC 495076 Query 124234 AAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAG 124293 ||||| | || || || || || || || |||| |||| ||| | || || || | Sbjct 495075 AAATTATGGGCAATAATGAGTCGTTTGAACCGTACACTTCGAATATTTATACACGTCGTG 495016 Query 124294 TGTTAGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAA 124353 || | | || || || ||||| | |||||||| ||| | ||| | | ||| Sbjct 495015 TGCTTTCGGGTGAATTCCAAGTTGTCAATCATCACTTGTTACGCGATCTCACCGAGTTGG 494956 Query 124354 ATTTGTACGATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCA 124413 ||||| ||||| | ||| || ||||| | |||| | || || Sbjct 494955 GTTTGTGGGATGATGATATGAAAAATACCATTATAACACATCGTGGTTCTATACAAAACA 494896 Query 124414 TCGCTTCGATTCCGGAACACGTCAAGC-AACTGTACAAAACCGTGTGGGAAATGAAAAAT 124472 | | | || ||| |||| | | || | |||||||| || || ||||| || | Sbjct 494895 TTGAAACCATACCGAAACATAT-ACGCGATCTGTACAAGACTGTTTGGGAGATTTCAGTG 494837 Query 124473 AAACGATTAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTT 124532 ||| | || ||||||| | || || ||||| | || |||||||| ||||| || Sbjct 494836 AAAACCTCCATCAAAATGGCTGCAGATCGTGGCGCATTCATCGATCAAAGCCAATCGTTC 494777 Query 124533 AACGTGTTTGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGG 124592 || | || || || |||| ||| | | | ||| |||||| | | | ||| Sbjct 494776 AATATACACGTGGCCGAGCCCAACTATGGCAAGCTCACCTCTATACACTTTTATGGTTGG 494717 Query 124593 AGCAGC-GGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCAT 124651 | ||| ||||||||||||||||||||||||||| | || || || || || |||| || Sbjct 494716 A-AAGCAGGACTCAAAACGGGCATGTATTACTTACGCACGAAGCCAGCAGCAAATGCTAT 494658 Query 124652 TCAATTTACCGTCGACAAA 124670 ||||| || || |||||| Sbjct 494657 ACAATTCACAGTTGACAAA 494639 >seq48 Length=1730007 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | |||||| | ||| || ||||| ||||||||||| || || ||| Sbjct 776901 ATACCACCACGAAGACGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCG 776842 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| |||||||||||||| ||| | ||||| || || || || || Sbjct 776841 GACAAGGTGCGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGT 776782 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || ||||| ||||||||||| ||||| ||| | |||||| || | |||| Sbjct 776781 GGGATACCCTCTTTGTCTTGAATTTTAGCTTTGACATTTTCGATGGTGTCAGATGGCTCG 776722 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || | || || || |||| ||||| || ||||| ||||| Sbjct 776721 ACCTCTAAGGTGATGGTCTTACCAGTTAATGTTTTGACGAAAATCTGCAT 776672 >seq10 Length=3877145 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | ||| || | ||| || |||||||||||||||||||| || || Sbjct 2845275 ATACCACCACGGAGACGCAATACCAAATGAAGAGTTGATTCCTTTTGGATATTGTAGTCC 2845216 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || ||||||||||| || || | ||||| ||||| || || || Sbjct 2845215 GACAGGGTGCGTCCGTCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGT 2845156 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || |||||||| ||||| || | || | || ||||||| ||| Sbjct 2845155 GGAATGCCCTCCTTATCTTGGATTTTGGCCTTAACATTCTCAATAGTATCGGAAGGCTCA 2845096 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || | ||||| ||||| || || || ||||| |||||||| Sbjct 2845095 ACTTCCAAGGTTATGGTTTTACCGGTCAGGGTCTTCACAAAGATTTGCAT 2845046 Score = 114 bits (126), Expect = 1e-20 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 |||| ||| | || |||||||| || |||||||| ||| ||| || | | ||| | Sbjct 2844798 ACTAAATGTAATGTGGATTCCTTCTGAATATTATAGTCG--GACAGTGTGCGTCCATCCT 2844741 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 |||| ||||| || ||| | ||||| ||||| || || || || || ||||| ||||||| Sbjct 2844740 CCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATCTT 2844681 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||||||| ||||| || | || ||||||| ||| || || | ||| | |||| Sbjct 2844680 GAATTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTT 2844621 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || | |||||| || ||||| ||||| Sbjct 2844620 TTCCCGTCAAAGTTTTGACGAAAATCTGCAT 2844590 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | ||| || | ||| || ||||||||||||||||| || |||||| Sbjct 2845503 ATGCCACCACGGAGACGCAATACCAAATGAAGGGTTGATTCCTTTTGGATGTTGTAATCG 2845444 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || ||||||||||| || || | ||||| ||||| || || || Sbjct 2845443 GACAAAGTACGTCCGTCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGT 2845384 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || |||||||| || || || | ||| | ||||||||| | ||| Sbjct 2845383 GGGATTCCCTCCTTATCTTGGATCTTAGCCTTAACGTTTTCGATGGTGTCGGATGGTTCG 2845324 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||||| ||||| || || || || || || || |||||||| Sbjct 2845323 ACCTCCAAAGTAATAGTTTTACCAGTAAGGGTCTTCACGAAGATTTGCAT 2845274 Score = 107 bits (118), Expect = 2e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | ||| || | || || ||||| ||||||||||| || || ||| Sbjct 2845047 ATACCACCACGGAGACGCAATACCAAGTGAAGTGTTGACTCCTTTTGGATGTTGTAGTCG 2844988 Query 45171 CTGACGGTTTTAGAA--TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | || |||||||| || || ||| | || || ||||| || || | Sbjct 2844987 --GACAATGTGCGTCCGTCCTCCAATTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTG 2844930 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||| || ||||| |||||||||||| ||| | ||| | || || |||| | Sbjct 2844929 GGGGAATACCCTCTTTGTCTTGAATTTTTGCTTTAACGTTTTCGATTGTATCAGAAGGTT 2844870 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || ||||||| ||||| || || | ||||| || || |||||||| Sbjct 2844869 CAACCTCCAGAGTAATTGTTTTTCCCGTCAATGTTTTAACGAAGATTTGCAT 2844818 >seq558 Length=79715 Score = 98.7 bits (108), Expect = 9e-16 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| |||||||||||||| || | || || || || || || || ||||| ||||| || Sbjct 66337 ATCCTCCAATTGTTTTCCGGCAAAAATTAAACGCTGTTGATCTGGTGGAATCCCTTCCTT 66278 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 |||||| ||||| ||| | ||| | || || |||| || || || ||||| | Sbjct 66277 ATCTTGGATTTTGGCTTTAACATGTTCGATAGTATCCGAAGGTTCAACCTCAAGAGTGAT 66218 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGC 45343 ||||| || || || |||||||| ||||||||||| || Sbjct 66217 GGTTTTACCCGTAAGGGTTTTTACGAAAATTTGCATTGC 66179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451971717977120