Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_012756.1 Length=31276 Score E Sequences producing significant alignments: (Bits) Value seq884 86.0 1e-12 seq641 86.0 1e-12 >seq884 Length=19560 Score = 86.0 bits (94), Expect = 1e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 8420 GCAGTGAATCGCAATTTTAAGAATCAGGCAGGTGATCGTGAAGCTGATTTTATCAGTTGC 8479 || ||||| || || |||| || || || || || ||||| |||||||||| || Sbjct 892 GCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAACTGT 951 Query 8480 ATCATGTGGCGTCAACAGGCTGAAAACTTTGCAAATTGGCTTAAAAAAGGTGCTCTTGTA 8539 | || |||||| | | ||||||| | || |||| | ||||| | | || Sbjct 952 GTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATTATACTCGTAAAGGAACATTATTA 1011 Query 8540 GGAATCACAGGCCGCATCCAGACTCGTAGCTATGATAATCAGCAAGGCCAACGTGTCTAT 8599 ||| | ||| | || || ||||||| ||||| || || |||||||||||||||||| Sbjct 1012 GGAGTTGTTGGCAGAATTCAAACTCGTAATTATGACAACCAACAAGGCCAACGTGTCTAT 1071 Query 8600 GTGACAGAAGTGGTAGCTGAAAGTTTTCAA 8629 ||||| ||||| || || ||||| ||| Sbjct 1072 GTGACTGAAGTTGTTTGCGAGAGTTTCCAA 1101 >seq641 Length=27874 Score = 86.0 bits (94), Expect = 1e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 8420 GCAGTGAATCGCAATTTTAAGAATCAGGCAGGTGATCGTGAAGCTGATTTTATCAGTTGC 8479 || ||||| || || |||| || || || || || ||||| |||||||||| || Sbjct 26983 GCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAACTGT 26924 Query 8480 ATCATGTGGCGTCAACAGGCTGAAAACTTTGCAAATTGGCTTAAAAAAGGTGCTCTTGTA 8539 | || |||||| | | ||||||| | || |||| | ||||| | | || Sbjct 26923 GTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATTATACTCGTAAAGGAACATTATTA 26864 Query 8540 GGAATCACAGGCCGCATCCAGACTCGTAGCTATGATAATCAGCAAGGCCAACGTGTCTAT 8599 ||| | ||| | || || ||||||| ||||| || || |||||||||||||||||| Sbjct 26863 GGAGTTGTTGGCAGAATTCAAACTCGTAATTATGACAACCAACAAGGCCAACGTGTCTAT 26804 Query 8600 GTGACAGAAGTGGTAGCTGAAAGTTTTCAA 8629 ||||| ||||| || || ||||| ||| Sbjct 26803 GTGACTGAAGTTGTTTGCGAGAGTTTCCAA 26774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 99954985790832