Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_012884.1 Length=31147 Score E Sequences producing significant alignments: (Bits) Value seq884 143 5e-30 seq641 143 5e-30 >seq884 Length=19560 Score = 143 bits (158), Expect = 5e-30 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 28500 TTTACGCTTGCGGTTAACCGTAATTTTAAAAATCAAAATGGTGAACGTGAAGCTGATTTC 28559 ||||| ||||| || |||||||| |||| ||| ||||| || ||||| ||||| ||||| Sbjct 883 TTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTT 942 Query 28560 ATTAATATCGTGATTTGGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAAAAAAGGG 28619 || || || ||||||||| ||| ||||||| | ||||| | || ||||| Sbjct 943 ATCAACTGTGTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATTATACTCGTAAAGGA 1002 Query 28620 ACTCTTTTAGGCATTACTGGTCGAATTCAGACCCGCAATTATGAAAACCAACAAGGTCAG 28679 || | ||||| || ||| ||||||| || || |||||||| ||||||||||| || Sbjct 1003 ACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGTAATTATGACAACCAACAAGGCCAA 1062 Query 28680 CGTGTTTACGTCACAGAAGTTGTTGCGGATAATTTCCAA 28718 ||||| || || || ||||||||| || | ||||||| Sbjct 1063 CGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAA 1101 >seq641 Length=27874 Score = 143 bits (158), Expect = 5e-30 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 28500 TTTACGCTTGCGGTTAACCGTAATTTTAAAAATCAAAATGGTGAACGTGAAGCTGATTTC 28559 ||||| ||||| || |||||||| |||| ||| ||||| || ||||| ||||| ||||| Sbjct 26992 TTTACTCTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTT 26933 Query 28560 ATTAATATCGTGATTTGGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCTAAAAAAGGG 28619 || || || ||||||||| ||| ||||||| | ||||| | || ||||| Sbjct 26932 ATCAACTGTGTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATTATACTCGTAAAGGA 26873 Query 28620 ACTCTTTTAGGCATTACTGGTCGAATTCAGACCCGCAATTATGAAAACCAACAAGGTCAG 28679 || | ||||| || ||| ||||||| || || |||||||| ||||||||||| || Sbjct 26872 ACATTATTAGGAGTTGTTGGCAGAATTCAAACTCGTAATTATGACAACCAACAAGGCCAA 26813 Query 28680 CGTGTTTACGTCACAGAAGTTGTTGCGGATAATTTCCAA 28718 ||||| || || || ||||||||| || | ||||||| Sbjct 26812 CGTGTCTATGTGACTGAAGTTGTTTGCGAGAGTTTCCAA 26774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 99542213104776