Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_013643.1 Length=36270 Score E Sequences producing significant alignments: (Bits) Value seq1321 697 0.0 seq273 470 3e-128 seq5340 468 1e-127 seq641 441 2e-119 seq884 342 1e-89 seq3605 241 3e-59 >seq1321 Length=4872 Score = 697 bits (772), Expect = 0.0 Identities = 598/739 (81%), Gaps = 0/739 (0%) Strand=Plus/Plus Query 34539 TTATGGATTGCTGCGTATCCTATCGATGGTGTGTCACCATATCCATTGTATGCTTATTTC 34598 |||||||| || | ||||| ||| ||| |||| |||||| || |||||| Sbjct 2395 TTATGGATGGCAGAATATCCAGATTATGAAGTGACACCTTATCCAAATTACAATTATTTT 2454 Query 34599 CCAAGCATGGATGGTATCGCAATTTGGCAATTTACCTCCACTTATATTGCTGGTGGGTTA 34658 || | || ||||| |||| || || || || || || |||| || ||| || Sbjct 2455 CCTTCATTTGAAAATATCGGTATTTTTCAGTTCACGTCAACCTACGTTGCAGGAGGGCTA 2514 Query 34659 GATGGGAATGTTGATTTAACAGGTATTACTGATAATGGCTACACAGATACAGATAAGCCA 34718 ||||| || ||||||||||||||||||||||||||||| || ||| | | | | ||| Sbjct 2515 GATGGTAACGTTGATTTAACAGGTATTACTGATAATGGTTATACAAAGAATAACCAACCA 2574 Query 34719 GAGACGGACACACCAGCAACAGATGCAGGTAAAGAAACTGAAGATACGCCTAATACTGCA 34778 | || |||||||||||| |||||||| || || ||| ||||||| | | | | Sbjct 2575 GCAACAAACACACCAGCAATTGATGCAGGGGAAAAAGTCGAAAATACGCCAAGTTCCGAT 2634 Query 34779 GTAAAAGTCGGTGACACAGTTAAAGTGAAATTTAATGTTGATGCTTGGGCAACTGGCGAA 34838 || |||||||| || || |||||||||||||||| |||||||||||||| || || ||| Sbjct 2635 GTTAAAGTCGGCGATACTGTTAAAGTGAAATTTAGCGTTGATGCTTGGGCTACAGGTGAA 2694 Query 34839 GCTATTCCAGATTGGGTAAAAGGAAACAGCTACAAAGTGCAAGAAGTAACTGGAAGTAGA 34898 |||||||| | |||||||||||||||||||||||||||||||||| ||||| || ||| Sbjct 2695 GCTATTCCGCAATGGGTAAAAGGAAACAGCTACAAAGTGCAAGAAGCAACTGAGAGCAGA 2754 Query 34899 GTATTGCTAGAAGGCATTTTGTCGTGGATTAGCAAAGGGGATATTGAACTATTGCCAGAT 34958 |||||||| |||||||| ||||| ||||| |||||||| ||||||||| ||||||||||| Sbjct 2755 GTATTGCTTGAAGGCATCTTGTCATGGATCAGCAAAGGCGATATTGAATTATTGCCAGAT 2814 Query 34959 GCAACAGTCGTCCCTGATAAGCAACCAGAAGCAACTCATGTGGTACAATACGGTGAAACG 35018 || | || |||||||| |||||||||||||| || ||| ||||||| ||||||||| Sbjct 2815 GCGGTAACTGTTCCTGATAAACAACCAGAAGCAACACACGTGATACAATATGGTGAAACG 2874 Query 35019 TTATCCAGCATTGCTTATCAATATGGAACAGACTATCAAGCGTTGGCGGCATTAAATGGA 35078 ||||||||||||||||| ||| ||||||||||||||||| |||| || | |||||||| Sbjct 2875 TTATCCAGCATTGCTTACCAACATGGAACAGACTATCAAACGTTAGCTTCGCTAAATGGA 2934 Query 35079 TTGACAAATCCAAATCTAATCTATCCTGGTCAAGTTTTGAAAGTTAACGGATCAGCAGTA 35138 ||||||||||| ||| | || ||||||||||||||||||||||| || |||||||||||| Sbjct 2935 TTGACAAATCCTAATTTGATTTATCCTGGTCAAGTTTTGAAAGTCAATGGATCAGCAGTA 2994 Query 35139 AGCAATGTTTACACGGTTCAATACGGCGACAATTTATCAAGTATTGCAACCAAACTAGGC 35198 ||||| ||||| || || ||||| || || ||||||||||||||||| | ||||| ||| Sbjct 2995 AGCAACGTTTATACAGTCCAATATGGTGATAATTTATCAAGTATTGCGGCTAAACTTGGC 3054 Query 35199 ACGACATACCAAGCTCTAGCGCAACGGAACGGATTAGCAAATCCTAACTTAATTTATCCA 35258 ||||| || |||||| |||| |||||||||||||||| |||||||||||||||||||| Sbjct 3055 ACGACTTATCAAGCTTTAGCACAACGGAACGGATTAGATAATCCTAACTTAATTTATCCT 3114 Query 35259 GGGCAAACATTGAACTATT 35277 || |||||||||||||||| Sbjct 3115 GGTCAAACATTGAACTATT 3133 Score = 360 bits (398), Expect = 4e-95 Identities = 359/469 (77%), Gaps = 3/469 (1%) Strand=Plus/Plus Query 33769 ATGATACTACCAGACAAGTATTACAAAATTATCAAATGGGGAGTACTTACGGTGCTTCCT 33828 ||||| |||||||| |||||||| ||||| ||||||||||||||||| || ||||||||| Sbjct 1689 ATGATTCTACCAGATAAGTATTATAAAATCATCAAATGGGGAGTACTAACCGTGCTTCCT 1748 Query 33829 GCGGGATCTGTTTTAGTAGCTACGTTAGGTAAAGCTTATGGGTGGCAACAAACAGATACG 33888 || | |||||||||||||| || ||||| ||||| || || ||||||||||| |||| | Sbjct 1749 GCTAGTTCTGTTTTAGTAGCAACTTTAGGCAAAGCCTACGGTTGGCAACAAACCGATATG 1808 Query 33889 GCAGTGTTGACTATTAACGCTTTATCAGCATTTTTAGGAGTTGTAACAGGCGTGTCAGCA 33948 | || || ||||| || ||| | || | ||||||||||| |||||||||||||||||| Sbjct 1809 GTTGTTTTAACTATCAATGCTATTGCAACTTTTTTAGGAGTAGTAACAGGCGTGTCAGCA 1868 Query 33949 TATAACTTAAAAGACAAGNNNNNNNNNNNNNNNNNNNNNNNNTTTTAGTAGGAGCGCTAG 34008 || || |||||||||||| ||||||| |||||| || Sbjct 1869 TACAATTTAAAAGACAAG-GAGTAAACGAATGAAAAAGAAAATTTTAGTTGGAGCGTTAA 1927 Query 34009 TCGCTCTATTTTTTATGCCTTTGAATGTATTTGCTGCAAAAGGTGACCAAGGTGTGGATT 34068 |||||||||||||||||||||| |||||||||||||| ||||| || ||||| || |||| Sbjct 1928 TCGCTCTATTTTTTATGCCTTTAAATGTATTTGCTGCTAAAGGCGATCAAGGCGTTGATT 1987 Query 34069 GGGCGATTTATCAAGGTGACCAAGGTCGCTTTGGTTATGCACATGATAAATTCGCTATCG 34128 | | |||| | || || |||| |||||||||||||||||||||||| | || Sbjct 1988 TGTCTATTTGGAATGGGGATCAAGCAACATTTGGTTATGCACATGATAAATTCTCAATTT 2047 Query 34129 CTCAAATTGG-CGGCTACAATGCTAGTGGTATTTATGAACAATACACATACAAAACGCAA 34187 | |||||||| ||| | | ||| ||| |||||||| ||| || || | ||| Sbjct 2048 CACAAATTGGTGGGCAAAACAACTA-TGGGATTTATGATCAAGTTACTTATTCTAGTCAA 2106 Query 34188 GTAGCAAGTGCCATTGCTCAAGGAAAACGAGCGCATACCTATATTTGGT 34236 ||||| ||| | ||||||||||| |||||||||||||| ||| | |||| Sbjct 2107 GTAGCTAGTACGATTGCTCAAGGTAAACGAGCGCATACGTATGTATGGT 2155 Score = 132 bits (146), Expect = 1e-26 Identities = 75/76 (99%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 35352 GGACCATTAGCTCAGTTGGTTAGAGCCAACCGCTCATAACGGTTAGGTCATAGGTTCGAG 35411 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 4366 GGACCATTAGCTCAGTTGGTTAGAGCCAACCGCTCATAACGGTTAGGTCACAGGTTCGAG 4425 Query 35412 TCCTGTATGGTCCATA 35427 |||||||||||||||| Sbjct 4426 TCCTGTATGGTCCATA 4441 >seq273 Length=32108 Score = 470 bits (520), Expect = 3e-128 Identities = 421/527 (80%), Gaps = 5/527 (1%) Strand=Plus/Minus Query 13577 ACATAGTTATTATACCACAAAAGGAGCGATTCCACTTGATTCAATTGCTAAAAGAAGTAG 13636 |||| | ||||||| || ||||||||||||| |||||||||||||| |||||||||| | Sbjct 18371 ACATTGATATTATAACATAAAAGGAGCGATTTAACTTGATTCAATTGTTAAAAGAAGTTG 18312 Query 13637 ATTTTCGACAAACAAAAGCGAATGCCAGAAATGTGTTGAAGAATTTTAGACGTTTAGAGC 13696 |||| | || || | ||| ||||| ||| |||||||| |||||||||||||| || | Sbjct 18311 ATTTCAGTCAGACTAGAGCCAATGCGAGAGCCGTGTTGAAAAATTTTAGACGTTTGGACC 18252 Query 13697 GAATAGCTGGTCGCTCTTTGATAGATTTAAAATCACCAATTATTACAGATATGCCTAAAA 13756 ||||||||||||| || || ||||| | || ||||| |||||||| ||||| ||| Sbjct 18251 GAATAGCTGGTCGTTCCTTAGTAGATGTTCGGTCGCCAATAATTACAGACATGCCCAAAG 18192 Query 13757 GCCAAAGTCATGGGAACAAAGCAGAAGATGCGCTAGTACAATTAGCAGATGCAGAAGCAG 13816 | || ||||| |||||||||||||||||| | | || | |||| |||| || Sbjct 18191 GTATAAAGCATGGCAACAAAGCAGAAGATGCGTTGATCCAGATGATTGATGTCGAAGTAG 18132 Query 13817 AAAGAGACGCAATTTTATCTGGGCTT--ATGGCATTAAGCCTAACTAGCAGACAAATTTT 13874 | | || ||||| || | ||||| ||| || ||||| | | || | |||||| | Sbjct 18131 AGCGTGATGCAATCCTAAC--GGCTTTGATGTCACTAAGCATTATAAGTCGTCAAATTCT 18074 Query 13875 GCACTATAGTTTCTGTGTGCAGGACCATTACTCTAATTACAAGATTGCTAGAGAAGTTGG 13934 ||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 18073 TCACTACAGTTTTTGCGTGCAGGACCATTACTCTAATTACAAGATTGCTAGAGAAGTTGG 18014 Query 13935 CTATTCCGAAAGAAGTATTCAAAGAATGAAATCAGAAGCTTTGATTGAATTCGCGGAAGC 13994 |||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||| Sbjct 18013 CTATTCCGAAAGAAGTATTCAACGCATGAAATCAGAAGCTTTGATTGAATTCGCAGAAGC 17954 Query 13995 TTACCGAAACGGCAAAATAATTGCATATAAATAA-TTTTGGCGGTTTTTTGGCGGAAAGN 14053 |||||| || |||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 17953 TTACCGCAATGGCAAAATAATTGCATATAAATAATTTTTGGCGGTTTTTTGGCGGAAAGT 17894 Query 14054 NNNNNNTTTTTATACGAATTTGAGTGCTAATATAGTAATATCGAAAG 14100 ||||||| |||| || || ||| || | ||||||| Sbjct 17893 TGGCGGTTTTTATCAATATTTAGTTGTTATTATGATAGTGTCGAAAG 17847 Score = 441 bits (488), Expect = 2e-119 Identities = 347/413 (84%), Gaps = 2/413 (0%) Strand=Plus/Minus Query 3285 AAAGGATGGCGAAAAACAAAATGAACAATTTAGTAATAATGAAAAATCACCAAGCAGTAA 3344 ||| || || || ||||| ||| ||||| |||||||||||||||| | |||| |||| Sbjct 28608 AAATGAAGG-GAGAAACAGAATATGCAATT-AGTAATAATGAAAAATAAACAAGTGGTAA 28551 Query 3345 CAAGTAGTTTACAAGTTGCTGAAGTTTTTGGCAAAGAACACAAAGTTGTTCTAAAAGCCA 3404 ||||||||||||||||||||||| ||| | ||| | || ||| |||| || |||||| Sbjct 28550 CAAGTAGTTTACAAGTTGCTGAAACATTTAGAAAACAGCATAAACATGTTTTAGAAGCCA 28491 Query 3405 TTGATGAAATAAAACAGGGGGTGGCACAAAATTATGCCGACCTATTTTACGAAGATACCT 3464 |||||||| |||| || ||| | || |||||| || ||| ||||||| ||||||| | Sbjct 28490 TTGATGAATTAAAGCAAGGGCTAGCCGAAAATTCGGCAGACTTATTTTATGAAGATATAT 28431 Query 3465 ACATTCATCCACAAAACAAACAATCTTATCGCCAAGTAATTATGAACCGTGACGGATTTA 3524 | ||||||| |||||||||||||||||||||||||| || ||||| || ||||| || | Sbjct 28430 ATGTTCATCCGCAAAACAAACAATCTTATCGCCAAGTTATCATGAATCGCGACGGCTTCA 28371 Query 3525 CATTATTAGCAATGGGATTCACAGGTCAAAAAGCTTTGCAATTTAAATTGAAATATATTG 3584 | |||||||||||||| ||||| |||||||| || ||||| || ||| |||||||||||| Sbjct 28370 CTTTATTAGCAATGGGGTTCACTGGTCAAAAGGCATTGCAGTTCAAACTGAAATATATTG 28311 Query 3585 AAGCTTTCAATCAAATGGAAAAAGAAATTCAACAGCCTAAACTTCCAACCTCGCAAAGAG 3644 | ||||| ||||||||||||||||||||||||||||| ||||| ||||| || |||||| Sbjct 28310 AGGCTTTTAATCAAATGGAAAAAGAAATTCAACAGCCCAAACTACCAACTTCCAAAAGAG 28251 Query 3645 AATTGGCGATGCTTGCTTTATCAGCAAATGAAGAAACAAATGAGCGTGTAGAT 3697 || | || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 28250 AACTAGCAATGCTTGCTTTATCAGCAAATGAAGAAACAAATGAGCGTGTAGAT 28198 Score = 309 bits (342), Expect = 7e-80 Identities = 207/231 (90%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 11819 CTCAACGAAAATCAGCAGATTGTGCTTGATTGGTTGAAAGAATCATGCAAATTACACGGA 11878 ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 20719 CTCAACGAAAATCAGCAGACTGTGCTGGATTGGTTGAAAGAATCATGCAAATTACACGGA 20660 Query 11879 TTACGTGAAGTTATCGAAATCATGGGATTTTTATCAACTACTGGTGGGAAAATGAAGTAT 11938 |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 20659 TTACGTGAAGTTATCGAAATTATGGGATTTTTATCAACTACTGGTGGAAAAATGAAGTAT 20600 Query 11939 AAGCAAGTAGCTTATGCATATGGTGATTTAAATGATGATGAATTGAAGCAAGTCATACAA 11998 |||||| ||||||||||||||| |||||||||||| | |||||| ||||| |||| Sbjct 20599 AAGCAAATAGCTTATGCATATGCTGATTTAAATGAGGTTGAATTAGCTCAAGTATTACAG 20540 Query 11999 GCTTTTAGTCAGTAGTCCTTAGAACAGGAGGAAGCGGAATGAGTTATGAAA 12049 || ||| | |||| | | || |||||||||||||||||||||| || |||| Sbjct 20539 GCGTTTGGCCAGTGGGCTTTGGAACAGGAGGAAGCGGAATGAGCTACGAAA 20489 Score = 260 bits (288), Expect = 3e-65 Identities = 304/408 (75%), Gaps = 2/408 (0%) Strand=Plus/Minus Query 869 TAGCCAAGCGGTACTTTTCCACTAACAACTTCACCTTTTCGTATTTTATTATCGAAAACG 928 || |||| || || | ||| | || ||||| || |||| ||||| || || || || Sbjct 30731 TAACCAAAAGGAACGCTACCAGTTACCACTTCTCCCTTTCTAATTTTGTTTTCAAATACT 30672 Query 929 GCACGAATTCTTTCAGAAGTCATCTGTGCTTCAAGCTCAGCAAAACCCATTGATTGATTT 988 || || | |||||| | ||| |||||||| | |||||||||| |||||| ||||| Sbjct 30671 GCTTTGATACGTTCAGACGCCATTTGTGCTTCTAATTCAGCAAAACTCATTGACTGATTA 30612 Query 989 ACAAATGAACGGCCCATTGCTGTTTCTGTGTTAAAGAAAGGTTGTGTAACGGCTAACCAA 1048 ||||| ||||| || || || || || || || || ||||||| |||||| | ||| Sbjct 30611 ACAAAGGAACGTCCATAAGCAGTATCAGTATTGAAAAATGGTTGTGAAACGGCAAGCCAT 30552 Query 1049 GTAACATTGTTTTTGTCTAGTATTTCTTGAATATTTAAATAATGACGTAAATTTCTAAAC 1108 || || || |||| |||||||||||||||||| ||||||||||||||||||||| Sbjct 30551 GTTACGCCAGAATTATCTAATATTTCTTGAATATTTAAGTAATGACGTAAATTTCTAAAC 30492 Query 1109 CATCTATCTAATTTTGTAAATAAGATTGTATCGAtttt-tccttttttAACATCATCTAA 1167 |||| ||||||||| ||||| || || |||| ||| | | |||||||| ||| ||||| Sbjct 30491 CATCGATCTAATTTGGTAAACAAAATAATATCTATTCTGTTCTTTTTTAT-ATCTTCTAA 30433 Query 1168 TAATTTTTGAAATTCATCACGATATAGTTTCTGACCTGAAATGCCATCATCTATATAAGT 1227 ||| |||||||||||| || || | ||| || ||||||||||| ||||| ||||| || Sbjct 30432 TAAGCGTTGAAATTCATCGCGGTACAATTTTTGTCCTGAAATGCCGTCATCAATATACGT 30373 Query 1228 TTTGAATACTCTCATATTTCCTTGTTGTCTTACGTATTCATTTAAAGT 1275 | | | | ||| ||| |||| ||||| || || |||||||| Sbjct 30372 GTCAATGATTGTCAAATTGTCTTGAGTACTTACATAATCTTTTAAAGT 30325 Score = 163 bits (180), Expect = 7e-36 Identities = 210/286 (73%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 32297 GCATATTTTTC-TTTCATGAAGGATGATAGGAGAGAATCTACTGATGATTTTGAGATTAC 32355 ||||||||||| ||||| ||| ||| | ||||| |||| | || ||| | |||| Sbjct 916 GCATATTTTTCGTTTCAAAAAG-ATGGGAAAAGAGATACTACGGGAGACTTTAAAATTAT 858 Query 32356 GGTGTACGGGAATGCTGACATTGATGCAGAAGAAGCAAAAACTATAATTACTGAATACAA 32415 || | || ||||||||||||||||| | |||||| |||| || |||||||||||||| Sbjct 857 TGTTAAAGGAAATGCTGACATTGATGCCGGAGAAGCTGAAACAATTATTACTGAATACAA 798 Query 32416 CAAATTAGTTAAAGCTTTAAATGAAGCTTATCAATCTGCATTAGAAAAAATAGATACTGA 32475 ||| | || |||||||| |||||||| |||||| ||||| || | ||||| ||||||| Sbjct 797 TAAACTTGTAAAAGCTTTGAATGAAGCATATCAAGCTGCACTAAATAAAATGAATACTGA 738 Query 32476 TTACGATGCAGTTGTTAAGCGAATTGAAACAATAAAAACAGAGATGAATACATTACAAAC 32535 || | || |||| || || |||||| | || || ||| | ||||| || ||| Sbjct 737 CTATGCTGATGTTGAAAAACGTATTGAAGCGATCAAGGTAGATTTAAATACGCTAAAAAA 678 Query 32536 GCAAAT---TGATAAAACAGTAAGTGATGCAGAAGGCCGTATTTCA 32578 ||||| |||| | ||| ||||||||||| || |||||| Sbjct 677 ACAAATAACAGATATATTGGTA---GATGCAGAAGGTCGCATTTCA 635 Score = 93.3 bits (102), Expect = 1e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 206 TCTTCTCTGTCTTTTTTATATTCCTCTAATGTTATAACCTCATTTAGATAAGCttttttt 265 |||| ||| ||||| |||||||| ||||| ||||||||||||| ||||| ||||||||| Sbjct 31394 TCTTTTCTATCTTTCTTATATTCGTCTAAACTTATAACCTCATTAAGATACGCTTTTTTT 31335 Query 266 agtctatctattttcttttttatttt 291 | | |||||||||||| |||||| Sbjct 31334 AACCGTTCTATTTTCTTTAGTATTTT 31309 Score = 86.0 bits (94), Expect = 1e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 11433 CTCATGCAATCAACAGGGTTAAAAGACAAGAACGGCGTTGAAATTTTTGAGGGTGAT 11489 || |||||||| ||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 21072 CTTATGCAATCCACAGGATTAAAAGATAAGAACGGCGTTGAAATTTTTGAGGGTGAT 21016 >seq5340 Length=1013 Score = 468 bits (518), Expect = 1e-127 Identities = 432/546 (79%), Gaps = 32/546 (6%) Strand=Plus/Minus Query 3284 GAAAGGATGGCGAAAAACAAAATGAACAATTTAGTAATAATGAAAAATCACCAAGCAGTA 3343 ||||||| || ||||||||||||||||||||||||| |||||| | | ||||| ||| Sbjct 530 GAAAGGAAGG---AAAACAAAATGAACAATTTAGTAATTATGAAAGACAAACAAGCGGTA 474 Query 3344 ACAAGTAGTTTACAAGTTGCTGAAGTTTTTGGCAAAGAACACAAAGTTGTTCTAAAAGCC 3403 ||||||||| | |||||||||||||| || | || ||||||||| ||| || | || Sbjct 473 ACAAGTAGTCTGCAAGTTGCTGAAGTATTCGATAAGCAACACAAAGATGTATTAGAGGCA 414 Query 3404 ATTGATGAAATAAAACAGGGGGTGGCACAAAATTATGCCGA---------CCTATTTTAC 3454 |||||| | || || || || |||||| || | | | ||| Sbjct 413 ATTGATACGAAAATTCAATCGGCGG---AAAATTCCGCTCATTACCAAATCATGTTTGCT 357 Query 3455 GAAG----ATACCTACATTCATCC---ACAAAACAAACAATCTTATCGCCAAGTAATTAT 3507 || | |||| | ||||| | ||| |||| | | | | || || Sbjct 356 GAGGGAGAATACAAAGATTCAAGAGGTAGAAAGCAAAGATTGT--------ATTAC--AT 307 Query 3508 GAACCGTGACGGATTTACATTATTAGCAATGGGATTCACAGGTCAAAAAGCTTTGCAATT 3567 ||| ||||| || ||| | || | ||| | ||||||||||| ||||||| ||| Sbjct 306 GAATCGTGATGGCTTTTCTTTTATTGCATTTGGATTCACAGGCAAAAAAGCAGATACATT 247 Query 3568 TAAATTGAAATATATTGAAGCTTTCAATCAAATGGAAAAAGAAATTCAACAGCCTAAACT 3627 ||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| Sbjct 246 CAAACTGAAATATATTGAAGCTTTTAATCTAATGGAAAAAGAAATTCAACAGCCTAAACT 187 Query 3628 TCCAACCTCGCAAAGAGAATTGGCGATGCTTGCTTTATCAGCAAATGAAGAAACAAATGA 3687 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 186 TCCAACCTCGCAAAGAGAATTGGCGATACTTGCTTTATCAGCAAATGAAGAAACAAATGA 127 Query 3688 GCGTGTAGATGTAATCGAAAAAGAAGTAGCCAACTTAAAAGACAATCAAAAAATCGGTGC 3747 ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| Sbjct 126 GCGTGTAGATGTAATAGAAAAAGAAGTAGCCGACTTAAAAGACAATCAAAAAATCGGTGC 67 Query 3748 AGATGATTATAGCTACTTATCACGTCGAGTTCATCAACGAGTAGCAGAAGTTGCAAGAGG 3807 |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 66 AGATGATTATGGCTACTTATCACGCCGAGTTCATCAACGAGTAGCAGAAGTTGCAAAAGG 7 Query 3808 ATTTGG 3813 |||||| Sbjct 6 ATTTGG 1 >seq641 Length=27874 Score = 441 bits (488), Expect = 2e-119 Identities = 267/282 (95%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 12024 AGGAGGAAGCGGAATGAGTTATGAAAATTACAAAAATTGTGTTGAAGAGGTAAAAGACAA 12083 ||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 24278 AGGAGGAAGAAGAATGAGCTACGAAAATTACAAAAATTGTGTTGAAGAGGTAAAAGACAA 24219 Query 12084 GAACGGTAAAGTAATTAAATATCATGACGTTGTTCGAACGTTACGAGGTGAAATTTTATT 12143 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 24218 GAACGGTAAAGTAATTAAATATCATGACGTTGTTCGAACGTCACGAGGTGAAATTTTATT 24159 Query 12144 AGTCGGTTTTGGAGTAAATCACCATCATAAAACAAAAGGTTTGAATGCCTTTAATAATTT 12203 ||| || |||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 24158 AGTAGGATTTGGAGTAAATCACCATCATAAAACAAAAGGTTTGAATGCCGTTAATGATTT 24099 Query 12204 TATTGGTGCTCATGATTGGTTAGATGTTTACCCAGATGGAGAATTAGAAATCCTAGGAAA 12263 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 24098 TATTGGTGCTCATGATTGGTTAGATGTTTATCCAGATGGAGAATTAGAAATCCTAGGAAA 24039 Query 12264 TGTTGACtttttttGGGAGGGGCAGCGATGAATAAACAAGAA 12305 ||||| |||||| |||||| |||||||||||||||||||| Sbjct 24038 CGTTGATTTTTTTGGGGAGGAACAGCGATGAATAAACAAGAA 23997 Score = 96.9 bits (106), Expect = 8e-16 Identities = 59/63 (94%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 11430 GTCCTCATGCAATCAACAGGGTTAAAAGACAAGAACGGCGTTGAAATTTTTGAGGGTGAT 11489 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 25022 GTCCTTATGCAATCAACAGGTGTAAAAGACAAGAACGGCGTTGAAATTTTTGAGGGGGAT 24963 Query 11490 ATT 11492 ||| Sbjct 24962 ATT 24960 >seq884 Length=19560 Score = 342 bits (378), Expect = 1e-89 Identities = 207/219 (95%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 11639 ATTGGAGGGAAAATGATGATTAAATTTAAAGAATTTGATGTCGGTGATATTCGCTATGAA 11698 |||||||||| | |||||||| |||||||||||||||||||||||||||| ||||||| Sbjct 3380 ATTGGAGGGAGCAGAATGATTAAGTTTAAAGAATTTGATGTCGGTGATATTCACTATGAA 3439 Query 11699 GAACAAATAGAAAAATTTCAAAAGGAACACCAAAATGCTGAATTTATACAAATTACAGGT 11758 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3440 GAACAAATAGAACAATTTCAAAAGGAACACCAAAATGCTGAATTTATACAAATTACAGGT 3499 Query 11759 GGGTATACATCCTATGAAAAAATTTGGTTCAAATATGACGATCGTATTGAGCGACCAGAA 11818 |||||||||||||||||||||||||||||||||||||| ||| ||||||| | ||||||| Sbjct 3500 GGGTATACATCCTATGAAAAAATTTGGTTCAAATATGATGATGGTATTGAACAACCAGAA 3559 Query 11819 CTCAACGAAAATCAGCAGATTGTGCTTGATTGGTTGAAA 11857 |||||||||||||||||||||||||| |||||||||||| Sbjct 3560 CTCAACGAAAATCAGCAGATTGTGCTGGATTGGTTGAAA 3598 Score = 228 bits (252), Expect = 2e-55 Identities = 158/179 (88%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 13025 AGTTATCCAGAAGTTTATATTTTAGGGCGACAAGTCAATGGCATTTATGTTGAATACCTG 13084 |||||||||||| | ||||| | || || ||||| | ||| |||||||||| |||||| Sbjct 5504 AGTTATCCAGAATTATATATACTGGGACGTCAAGTAGACGGCGTTTATGTTGAGTACCTG 5563 Query 13085 CGCGGATCAGAGCAAGCCGATTTATTTTTCGATTATACGATAGCTCGTGATGAAAGAAAT 13144 | |||||||||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct 5564 CATGGATCAGAGCAAGCCGATTTATTTTTCGATTATACGATTGCTCACGATGAAAGAAAT 5623 Query 13145 CATATGAATAAAACCAATACAAAAGATGGCGAATGGAGAATTTTAAAATATGGGAGGCC 13203 ||||||||||||||||||||||||||||||||||||| |||||| |||||||| || || Sbjct 5624 CATATGAATAAAACCAATACAAAAGATGGCGAATGGAAAATTTTGAAATATGGTAGACC 5682 Score = 84.2 bits (92), Expect = 5e-12 Identities = 51/54 (94%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 11436 ATGCAATCAACAGGGTTAAAAGACAAGAACGGCGTTGAAATTTTTGAGGGTGAT 11489 |||||||| |||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 2850 ATGCAATCCACAGGGTTGAAAGACAAGAACGGCGTTGAAATTTTTGAGGGGGAT 2903 >seq3605 Length=1427 Score = 241 bits (266), Expect = 3e-59 Identities = 195/236 (83%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 3303 AAATGAACAATTTAGTAATAATGAAAAATCACCAAGCAGTAACAAGTAGTTTACAAGTTG 3362 ||||| |||| |||||||| | |||| | || |||| ||||||||||||||||||| ||| Sbjct 236 AAATGGACAACTTAGTAATTACGAAAGACCAACAAGTAGTAACAAGTAGTTTACAAATTG 177 Query 3363 CTGAAGTTTTTGGCAAAGAACACAAAGTTGTTCTAAAAGCCATTGATGAAATAAAACAGG 3422 | ||| ||| ||| | || | |||| || ||| |||||||| ||||| ||| Sbjct 176 CCGAAACATTTAATAAAAACCATCGTGATGTTTTAGCAGCAATTGATGATTTAAAAGAGG 117 Query 3423 GGGTGGCACAAAATTATGCCGACCTATTTTACGAAGATACCTACATTCATCCACAAAACA 3482 |||| || ||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 116 GGGTTGCGGAAAATTACGCAGACCTATTTTACGAAGATACCTACATTCATCCACAAAACA 57 Query 3483 AACAATCTTATCGCCAAGTAATTATGAACCGTGACGGATTTACATTATTAGCAATG 3538 |||||||||||||||||||||||||||| || ||||| || || || ||||||||| Sbjct 56 AACAATCTTATCGCCAAGTAATTATGAATCGCGACGGCTTCACTTTGTTAGCAATG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 115934728381248