Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_013644.1 Length=37856 Score E Sequences producing significant alignments: (Bits) Value seq1321 690 0.0 >seq1321 Length=4872 Score = 690 bits (764), Expect = 0.0 Identities = 660/848 (78%), Gaps = 12/848 (1%) Strand=Plus/Plus Query 36595 ATCAAACAGGCTGGCTATACTCCAATGTATTACAGCTATAA--GCCATTTACACTAAATC 36652 |||||| ||||||| ||||| || ||| |||| | || || | || | ||| ||| Sbjct 2302 ATCAAAGAGGCTGGATATACACCGATGCTTTACGGATACAAAGGGTATCTT-ACTTCATC 2360 Query 36653 ATGTAAACTATCAACAAATCATCAAAGA-GTTTCCTAACTCTTTATGGATTGCTGCGTAT 36711 | | | ||||| || | |||||| || || || |||||||| || | ||| Sbjct 2361 TTATGATTTATCACGAATTG--CAAAGAAGTATC--AA----TTATGGATGGCAGAATAT 2412 Query 36712 CCTATCGATGGTGTGTCACCATATCCATTGTATGCTTATTTCCCAAGCATGGATGGTATT 36771 || ||| ||| |||| |||||| || |||||| || | || ||| Sbjct 2413 CCAGATTATGAAGTGACACCTTATCCAAATTACAATTATTTTCCTTCATTTGAAAATATC 2472 Query 36772 GGCATTTGGCAATTCACATCCGCTTATATTGCAGGTGGTTTAGATGGTAACGTAGATTTA 36831 || |||| || ||||| || | || ||||||| || ||||||||||||| |||||| Sbjct 2473 GGTATTTTTCAGTTCACGTCAACCTACGTTGCAGGAGGGCTAGATGGTAACGTTGATTTA 2532 Query 36832 ACAGGAATTACGGATAGTGGTTATACAGATACCAATAAACNNNNNNNNNNNNNNNNNNNN 36891 ||||| ||||| |||| |||||||||| | | || ||| Sbjct 2533 ACAGGTATTACTGATAATGGTTATACAAAGAATAACCAACCAGCAACAAACACACCAGCA 2592 Query 36892 NNNNNNGCAGGCGAAGAAATTGAAAAAATACCTAATTCTGATGTTAAAGTTGGAGATACC 36951 ||||| ||| || | ||||| | || | ||| ||||||||||| || ||||| Sbjct 2593 ATTGATGCAGGGGAAAAAGTCGAAAATACGCCAAGTTCCGATGTTAAAGTCGGCGATACT 2652 Query 36952 GTCAAAGTAAAATTTAATGTAGATGCTTGGGCAACAGGCGAAGCTATTCCGCAATGGGTA 37011 || ||||| ||||||| || ||||||||||| ||||| ||||||||||||||||||||| Sbjct 2653 GTTAAAGTGAAATTTAGCGTTGATGCTTGGGCTACAGGTGAAGCTATTCCGCAATGGGTA 2712 Query 37012 AAAGGAAACAGCTATAAAGTACAAGAAGTAACTGGAAGCAGAGTATTGCTAGAAGGCATT 37071 |||||||||||||| ||||| ||||||| ||||| |||||||||||||| |||||||| Sbjct 2713 AAAGGAAACAGCTACAAAGTGCAAGAAGCAACTGAGAGCAGAGTATTGCTTGAAGGCATC 2772 Query 37072 TTGTCGTGGATCAGCAAAGGCGATATTGAATTATTGCCAGATGCGGCAACTGTTCCTGAT 37131 ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2773 TTGTCATGGATCAGCAAAGGCGATATTGAATTATTGCCAGATGCGGTAACTGTTCCTGAT 2832 Query 37132 AAACAACCAGAAGCGACTCATGTGGTACAATACGGCGAAACATTATCAAGTATTGCTTAT 37191 |||||||||||||| || || ||| ||||||| || ||||| ||||| || |||||||| Sbjct 2833 AAACAACCAGAAGCAACACACGTGATACAATATGGTGAAACGTTATCCAGCATTGCTTAC 2892 Query 37192 CAATACGGAACAGACTATCAAACGTTAACGGCATTAAATGGATTGACAAATCCAAATCTT 37251 ||| | ||||||||||||||||||||| | | ||||||||||||||||||| ||| | Sbjct 2893 CAACATGGAACAGACTATCAAACGTTAGCTTCGCTAAATGGATTGACAAATCCTAATTTG 2952 Query 37252 ATTTATCCTGGTCAAGTTTTGAAAGTCAATGGATCGGCAACAGGTAATGTTTACACAGTC 37311 ||||||||||||||||||||||||||||||||||| ||| | | || ||||| |||||| Sbjct 2953 ATTTATCCTGGTCAAGTTTTGAAAGTCAATGGATCAGCAGTAAGCAACGTTTATACAGTC 3012 Query 37312 CAGTTTGGTGATAATTTATCTAGTATTGCAGCAAAACTTGGCACTACTTATCAAGCTTTA 37371 || | ||||||||||||||| |||||||| || ||||||||||| ||||||||||||||| Sbjct 3013 CAATATGGTGATAATTTATCAAGTATTGCGGCTAAACTTGGCACGACTTATCAAGCTTTA 3072 Query 37372 GCTGCATTAAACGGATTAGCAAATCCTAACTTAATTTATCCTGGTCAAACATTGAATTAT 37431 || | |||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 3073 GCACAACGGAACGGATTAGATAATCCTAACTTAATTTATCCTGGTCAAACATTGAACTAT 3132 Query 37432 TAATAAAA 37439 ||| |||| Sbjct 3133 TAAAAAAA 3140 Score = 365 bits (404), Expect = 1e-96 Identities = 365/480 (76%), Gaps = 1/480 (0%) Strand=Plus/Plus Query 35912 AGGTGTATAAGAATGATTCTACCAGATAAATACTACAAAATTATCAAATGGGGCGTGCTA 35971 ||| | | || |||||||||||||||||| || || ||||| ||||||||||| || ||| Sbjct 1677 AGGAGCAAAAAAATGATTCTACCAGATAAGTATTATAAAATCATCAAATGGGGAGTACTA 1736 Query 35972 ACAGTGCTGCCTGCAAGTTCTGTTTTGGTAGCCACGCTAGGTAAAGCTTATGGATGGCAG 36031 || ||||| ||||| ||||||||||| ||||| || |||| ||||| || || ||||| Sbjct 1737 ACCGTGCTTCCTGCTAGTTCTGTTTTAGTAGCAACTTTAGGCAAAGCCTACGGTTGGCAA 1796 Query 36032 CAAACAGATATGGCTGTTTTAACTATTAATACCATAGCAACTTTTTTAGGAGTGGTAACA 36091 ||||| ||||||| |||||||||||| ||| | || ||||||||||||||||| |||||| Sbjct 1797 CAAACCGATATGGTTGTTTTAACTATCAATGCTATTGCAACTTTTTTAGGAGTAGTAACA 1856 Query 36092 GGAGTATCAGCATATAATTTAAAAGACAAGNNNNNNNNNNNNNNNNNNNNNNNNTTTTAG 36151 || || |||||||| ||||||||||||||| |||||| Sbjct 1857 GGCGTGTCAGCATACAATTTAAAAGACAAG-GAGTAAACGAATGAAAAAGAAAATTTTAG 1915 Query 36152 TAGGAGCGCTTGTCGCTCTATTTTTTATGCCTTTAAATGTATTTGCTGCAAAAGGTGACC 36211 | |||||| | ||||||||||||||||||||||||||||||||||||| ||||| || | Sbjct 1916 TTGGAGCGTTAATCGCTCTATTTTTTATGCCTTTAAATGTATTTGCTGCTAAAGGCGATC 1975 Query 36212 AAGGTGTGGACTGGGCGATTTATCAAGGCGAACAGGGGCGTTTTGGCTATGCACATGATA 36271 |||| || || | | | |||| | || || || | ||||| ||||||||||||| Sbjct 1976 AAGGCGTTGATTTGTCTATTTGGAATGGGGATCAAGCAACATTTGGTTATGCACATGATA 2035 Query 36272 AATTCGCTATTGCCCAGATTGGTGGCTACAATGCCAGCGGTATTTATGAACAATACACAT 36331 ||||| | ||| | || |||||||| | || | || |||||||| ||| || | Sbjct 2036 AATTCTCAATTTCACAAATTGGTGGGCAAAACAACTATGGGATTTATGATCAAGTTACTT 2095 Query 36332 ATAAAACGCAAGTAGCAAGTGCTATTGCTCAAGGGAAACGAGCGCACACTTATATCTGGT 36391 || | |||||||| ||| | ||||||||||| ||||||||||| || ||| | |||| Sbjct 2096 ATTCTAGTCAAGTAGCTAGTACGATTGCTCAAGGTAAACGAGCGCATACGTATGTATGGT 2155 Score = 122 bits (134), Expect = 2e-23 Identities = 76/82 (93%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 37498 GGACCATTAGCTCAGTTGGTTAGAGCAAACGGCTCATAACCGTTCGGTCACAGGTTCGAG 37557 |||||||||||||||||||||||||| ||| ||||||||| ||| ||||||||||||||| Sbjct 4366 GGACCATTAGCTCAGTTGGTTAGAGCCAACCGCTCATAACGGTTAGGTCACAGGTTCGAG 4425 Query 37558 CCCTGTATGGTCCATAGCTAAA 37579 |||||||||||||||| |||| Sbjct 4426 TCCTGTATGGTCCATAGTTAAA 4447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 121009592567952