Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_013645.1 Length=34882 Score E Sequences producing significant alignments: (Bits) Value seq884 114 3e-21 seq641 114 3e-21 >seq884 Length=19560 Score = 114 bits (126), Expect = 3e-21 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 29239 CTTGCGGTTAACCGTAACTTTAAGGATGCTAATGGTGAGCGTGAAACTGACTTTATCAAT 29298 ||||| || ||||||||||||| | || || || || ||| | || |||||||| Sbjct 889 CTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAAC 948 Query 29299 TGCGTTATCTGGAGACAGCAAGCTGAAAACTTGGCTAACTGGGCTAAGAAAGGAGCATTG 29358 || || || ||| | ||| ||||||| ||||||| | || |||||| |||| Sbjct 949 TGTGTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATTATACTCGTAAAGGAACATTA 1008 Query 29359 ATTGGTATTACTGGACGTATTCAGACTCGTAGCTATGAAAATCAACAAGGTCAACGTGTT 29418 | || || ||| | ||||| ||||||| ||||| || |||||||| |||||||| Sbjct 1009 TTAGGAGTTGTTGGCAGAATTCAAACTCGTAATTATGACAACCAACAAGGCCAACGTGTC 1068 Query 29419 TACGTGACTGAAGTTGTT 29436 || ||||||||||||||| Sbjct 1069 TATGTGACTGAAGTTGTT 1086 >seq641 Length=27874 Score = 114 bits (126), Expect = 3e-21 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 29239 CTTGCGGTTAACCGTAACTTTAAGGATGCTAATGGTGAGCGTGAAACTGACTTTATCAAT 29298 ||||| || ||||||||||||| | || || || || ||| | || |||||||| Sbjct 26986 CTTGCTGTGAACCGTAACTTTACAAACCAAAACGGCGAACGAGAAGCGGATTTTATCAAC 26927 Query 29299 TGCGTTATCTGGAGACAGCAAGCTGAAAACTTGGCTAACTGGGCTAAGAAAGGAGCATTG 29358 || || || ||| | ||| ||||||| ||||||| | || |||||| |||| Sbjct 26926 TGTGTAATTTGGCGTAAGCCTGCTGAAACAATGGCTAATTATACTCGTAAAGGAACATTA 26867 Query 29359 ATTGGTATTACTGGACGTATTCAGACTCGTAGCTATGAAAATCAACAAGGTCAACGTGTT 29418 | || || ||| | ||||| ||||||| ||||| || |||||||| |||||||| Sbjct 26866 TTAGGAGTTGTTGGCAGAATTCAAACTCGTAATTATGACAACCAACAAGGCCAACGTGTC 26807 Query 29419 TACGTGACTGAAGTTGTT 29436 || ||||||||||||||| Sbjct 26806 TATGTGACTGAAGTTGTT 26789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 111493422270816