Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq71 111 3e-19 >seq71 Length=1348405 Score = 111 bits (122), Expect = 3e-19 Identities = 324/492 (66%), Gaps = 8/492 (2%) Strand=Plus/Plus Query 203840 TTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCG 203899 ||||| || ||||| || || || || | || ||| | | | | || |||||||| Sbjct 494640 TTGTCAACTGTGAATTGTATAGCATTTGCTGCTGGCTTCGTGCGTAAGTAATACATGCCC 494699 Query 203900 GTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGG 203959 || || || || | ||| || || | ||| || || | || |||| |||||| Sbjct 494700 GTTTTGAGTCCTGCTTTCCAACCATAAAAGTGTATAGAGGTGAGCTTGCCATAGTTGGGC 494759 Query 203960 TCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGC 204018 ||||||| ||| || || | || |||||||| |||||||| | |||| |||||||| || Sbjct 494760 TCGGCCACGTGTATATTGAACGATTGGCTTTGATCGATGAATG-CGCCACGATCTGCAGC 494818 Query 204019 CATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTG 204078 ||| ||||| ||| ||| ||||||||||| || |||||| ||| || | | || Sbjct 494819 CATTTTGATGGAGGTTTTCACTGAAATCTCCCAAACAGTCTTGTACAGATCGCGTATATG 494878 Query 204079 TTGAGGCACATCTTCCCACGTCCTG-ATCGAGC--CGTTGTCGGCCATCAGTCTCATCCT 204135 || || | || | | || || || || | || ||| | || | | | | Sbjct 494879 TTTCGGTA-TGGTTTCAATGTTTTGTATAGAACCACGATGT--GTTATAATGGTATTTTT 494935 Query 204136 CGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGAT 204195 | | || || |||||| |||||| | | || || || | || ||| | |||| | Sbjct 494936 CATATCATCATCCCACAAACCCAACTCGGTGAGATCGCGTAACAAGTGATGATTGACAAC 494995 Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 || || || || || ||||| | || || | | || ||| | ||||| |||| Sbjct 494996 TTGGAATTCACCCGAAAGCACACGACGTGTATAAATATTCGAAGTGTACGGTTCAAACGA 495055 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 ||| || ||||| | ||| || ||||| || || ||||| || || || | || || Sbjct 495056 CTCATTATTGCCCATAATTTGTGCGGTAGAAGCAGTTGGCATCGGTGCAAGCAACAATGA 495115 Query 204316 GTTGCGCACACC 204327 |||||| ||||| Sbjct 495116 GTTGCGTACACC 495127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795099817440320