Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq48 127 5e-24 seq10 105 2e-17 >seq48 Length=1730007 Score = 127 bits (140), Expect = 5e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||||| || ||||||||||||| ||||||||| | ||| || Sbjct 776892 CGAAGACGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTG 776833 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| || |||||||||||||| | |||||| || || || || || Sbjct 776832 CGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGGATACCC 776773 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || ||||| ||| || || || ||||| |||||| | || || || || || Sbjct 776772 TCTTTGTCTTGAAT-TTTAGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCTAA 776714 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||| || | ||||| || ||||| || Sbjct 776713 GGTGATGGTCTTACCAGTTAATGTTTTGACGAAAATCTG 776675 >seq10 Length=3877145 Score = 105 bits (116), Expect = 2e-17 Identities = 149/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || |||||||| |||| |||||| || | ||| || | ||| |||||||| || Sbjct 2844564 TGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAAGGTACGTCCGTCTTCCAGTTGT 2844505 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||| ||||| | ||| || || || || ||||||||| ||||||||||| Sbjct 2844504 TTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCCTGAATCTTA 2844445 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 || || ||| | || || | || ||| || |||| ||||| ||||| || || Sbjct 2844444 GCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTTGCCAGTC 2844385 Query 199607 AGAGTTTTCACAAAAATTTGGTACATTTT 199635 | || ||||| || ||||| |||||| Sbjct 2844384 AAGGTCTTCACGAAGATTTG---CATTTT 2844359 Score = 100 bits (110), Expect = 7e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || || ||||||||||||| ||||||||| | ||| || | ||| || |||| || Sbjct 2845021 GTGAAGTGTTGACTCCTTTTGGATGTTGTAGTCGGACAATGTGCGTCCGTCCTCCAATTG 2844962 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| || ||||| || | ||| || || || || ||| || ||| || ||||| || Sbjct 2844961 CTTGCCAGCGAAAATTAAACGTTGTTGATCTGGGGGAATACCCTCTTTGTCTTGAAT-TT 2844903 Query 199546 TTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCG 199604 |||| || ||| ||||| || || | | ||| || |||| || || || || |||| Sbjct 2844902 TTGCTTTAACGTTTTCGATTGTATCAGAAGGTTCAACCTCCAGAGTAATTGTTTTTCCCG 2844843 Query 199605 TGAGAGTTTTCACAAAAATTTG 199626 | | ||||| || || ||||| Sbjct 2844842 TCAATGTTTTAACGAAGATTTG 2844821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178837435313324