Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq10 102 9e-17 >seq10 Length=3877145 Score = 102 bits (112), Expect = 9e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| |||| ||| | || |||||||||||||||||||| || || ||||| | Sbjct 2845261 ACGCAATACCAAATGAAGAGTTGATTCCTTTTGGATATTGTAGTCCGACAGGGTGCGTCC 2845202 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || | || || ||||| || ||||| || || || || | || | || |||||| Sbjct 2845201 GTCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGAATGCCCTCCTT 2845142 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 || ||| || ||| | || | | || ||| | || || |||| || || Sbjct 2845141 ATCTTGGATTTTGGCCTTAACATTCTCAATAGTATCGGAAGGCTCAACTTCCAAGGTTAT 2845082 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| || ||||| || || |||||||||||||| Sbjct 2845081 GGTTTTACCGGTCAGGGTCTTCACAAAGATTTGCAT 2845046 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| |||| || | ||| |||||||||||| ||||||||||| | ||||| | Sbjct 2845033 ACGCAATACCAAGTGAAGTGTTGACTCCTTTTGGATGTTGTAGTCGGACAATGTGCGTCC 2844974 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || | |||||||| ||||| || || || || || || | || | | ||| || Sbjct 2844973 GTCCTCCAATTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGGGGAATACCCTCTTT 2844914 Query 46498 GTCCATGATCTTCTTCTTGAGCG-TCGCCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 || | ||| || | ||| | || | | | || || | ||| || |||| || | Sbjct 2844913 GT-CTTGAATTTTTGCTTTAACGTTTTCGATTGTATCAGAAGGTTCAACCTCCAGAGTAA 2844855 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | ||||| ||||||| |||||||| ||||||||||| Sbjct 2844854 TTGTTTTTCCCGTCAATGTTTTAACGAAGATTTGCAT 2844818 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 |||||| | | ||| | ||||| ||| | ||| ||||| || |||||||||||||| Sbjct 2847114 GCCTCCGCGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGA 2847055 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 | ||| || | || || ||||||||||||||||| ||||| ||||| || || | || Sbjct 2847054 CAAAGTACGTCCATCCTCAAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGATCTGGTGG 2846995 Query 46486 CACGCTCTCCTTGTCCATGATCTT 46509 | | |||||| || |||||| Sbjct 2846994 AATACCCTCCTTATCTTGGATCTT 2846971 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | || ||| | |||| ||| | |||| |||||| ||||| ||||| ||||| Sbjct 2844588 CCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGAC 2844529 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || |||| || || || || ||||| || || || || || || || | || Sbjct 2844528 AAGGTACGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGG 2844469 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || |||||| ||||| || | | | | || ||| | ||| || Sbjct 2844468 ATTCCTTCTTTGTCCTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCAACC 2844409 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||| |||||||| ||||| |||| || || || ||||||||||||||| Sbjct 2844408 TCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTTG 2844358 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | |||||| |||| ||| | || ||||||||||| ||||| |||| Sbjct 2845502 TGCCACCACGGAGACGCAATACCAAATGAAGGGTTGATTCCTTTTGGATGTTGTAATCGG 2845443 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | | ||| || |||| || | || || ||||| || ||||| || || || || | | Sbjct 2845442 ACAAAGTACGTCCGTCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTG 2845383 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | |||||| || |||||| ||| | | | | |||||| | ||| | Sbjct 2845382 GGATTCCCTCCTTATCTTGGATCTTAGCCTTAACGTTTTCGATGGTGTCGGATGGTTCGA 2845323 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| || || ||||| || || || || || || ||||||||||| Sbjct 2845322 CCTCCAAAGTAATAGTTTTACCAGTAAGGGTCTTCACGAAGATTTGCAT 2845274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565199031145440