Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq7 179 4e-40 seq48 131 2e-25 seq10 123 2e-23 seq558 96.9 3e-15 >seq7 Length=4380649 Score = 179 bits (198), Expect = 4e-40 Identities = 477/722 (66%), Gaps = 10/722 (1%) Strand=Plus/Plus Query 132711 CAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATT 132770 ||| ||||| | || | || ||||| || || || || | ||||| | || |||||| Sbjct 4094552 CAGCTCGACTAACAAGCGATCAGCCACAAATTCTATATAATCGGACATTGATTTGCAATT 4094611 Query 132771 AAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGC 132830 | || | | | || |||| || || || | || |||||| || || || Sbjct 4094612 CATACCAATTAAATTTACGGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTTTAACAGC 4094671 Query 132831 GTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACAT 132890 |||| | |||||| ||| || | || ||| || | |||||| | ||||| Sbjct 4094672 TTCGGAAATGATTTCAATAATTCGTTCATTACTTGGCTTCTGTATCAAATGTTGAAACAT 4094731 Query 132891 CAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGT 132950 ||| || || || || ||||||| |||||||| | || || || || ||| || || Sbjct 4094732 CAAACATGCGAAATCACAATGCAGACCCTCGTCTCGTGAGATTAGCTCATTGGAAAACGT 4094791 Query 132951 CAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCC--GAA 133008 ||||| ||||| | || |||||||| ||||| || || | || ||||| || ||| Sbjct 4094792 TAAGCCAGGCATTAAACCACGTTTTTTAAGCCAGAAGATCGACGCAAAACTTCCACTGAA 4094851 Query 133009 AAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT-CTTT 133067 || || || | || || || || || || | | || || || || | || |||| Sbjct 4094852 AAAAATAC--CTTCCACAGCTGCAAATGCAATTACACGTTCACCAAAGTTTGCCGACTTT 4094909 Query 133068 GCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGAT 133127 | || ||||| || ||||| || ||||| || ||| ||||||||||| || Sbjct 4094910 GA-GGAAATCCAAGCAAGTGCCCAATCTGCCTTACGCTTTACGGCAGGCATCGTTTCAAT 4094968 Query 133128 GGCGTTCAACAAACGGAGTTTCTCT--TCCGAGGAACGCACGTAGGTGTCGATGAGGGTC 133185 || || || ||| |||| || | | ||| | || || ||||| | | Sbjct 4094969 AGCATTGAATAAAT--AGTTCCTTTGTTTCGAATCCTTAATATATGTATCGATTAATATA 4095026 Query 133186 GAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCC 133245 ||||||||| || || ||||||||||| || |||||||| || || || || || ||| Sbjct 4095027 CTATACATTTCGGAATGCACGTTCTCCATAGCAATTTGAAATCCATAGAAACAACGTGCC 4095086 Query 133246 TCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCG 133305 || || || || || ||| ||| || || || | ||| || || || || || || Sbjct 4095087 TCTGTAACTTGGACCTCCTGACTGAATCGTTCAACTAAATTCTCATTAACAATACCATCA 4095146 Query 133306 CTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC 133365 ||||| |||||||| | ||||| ||||||||| || || ||||| | | || Sbjct 4095147 GATGCGGCAAAAAAGGCTAATACGTGTGAGATGAAATGCCGTTCATTGTCAGTGAGACGT 4095206 Query 133366 TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCG 133425 |||| || | | || || || || ||||| ||||| || |||||||||||||| || Sbjct 4095207 GCCCAATCATCCATATCTTTAGAAAGATCCACTTCCTCAACTGTCCAAAACGACGCTTCT 4095266 Query 133426 GC 133427 || Sbjct 4095267 GC 4095268 >seq48 Length=1730007 Score = 131 bits (144), Expect = 2e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 38243 aaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| ||||| | || || || ||||||||| | || |||||| | | Sbjct 776671 AATGCAGATTTTCGTCAAAACATTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCATC 776730 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||| | |||| ||||| | ||||||||||| || || | || || Sbjct 776731 TGACACCATCGAAAATGTCAAAGCTAAAATTCAAGACAAAGAGGGTATCCCACCAGATCA 776790 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | || | ||| || ||||| |||| || | |||||| | ||||||||| Sbjct 776791 ACAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACAA 776850 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || ||||||||| ||||| Sbjct 776851 CATCCAAAAGGAGTCAACCCTCCATTTGGTGTTGCGT 776887 >seq10 Length=3877145 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | ||||| ||||| || || | || || || | | Sbjct 2844818 ATGCAAATCTTCGTTAAAACATTGACGGGAAAAACAATTACTCTGGAGGTTGAACCTTCT 2844877 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | ||||| |||||| |||||| | ||||||||||| |||||| | || || Sbjct 2844878 GATACAATCGAAAACG-TTAAAGCAAAAATTCAAGACAAAGAGGGTATTCCCCCAGATCA 2844936 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | |||| ||| ||||| || |||| |||| ||||| | ||||||||| Sbjct 2844937 ACAACGTTTAATTTTCGCTGGCAAGCAATTGGAGGACGGACGCACATTGTCCGACTACAA 2844996 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || || ||||| ||||| Sbjct 2844997 CATCCAAAAGGAGTCAACACTTCACTTGGTATTGCGT 2845033 Score = 107 bits (118), Expect = 2e-18 Identities = 162/229 (71%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 38231 ACTCTTTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGA 38290 ||||||| |||| ||||||| ||||| || || | || ||||| |||||||| | || Sbjct 2844350 ACTCTTTCCAAAA-TGCAAATCTTCGTGAAGACCTTGACTGGCAAGACCATCACTCTGGA 2844408 Query 38291 CGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAAT 38350 || || | |||| | | ||| |||||| || || | |||||||| ||||| Sbjct 2844409 GGTTGAACCATCCGATACTATTGAAAATGTTAAAGCTAAGATTCAGGACAAAGAAGGAAT 2844468 Query 38351 TCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCT 38410 ||| | || ||||| || | || | || || ||||| ||||| |||| || ||| | Sbjct 2844469 CCCCCCAGATCAACAACGTTTAATCTTTGCCGGTAAACAACTGGAAGACGGACGTACCTT 2844528 Query 38411 CAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| ||||||||||| ||||| | || || |||||||| || ||| Sbjct 2844529 GTCCGATTACAACATCCAGAAGGAGTCTACACTTCATTTGGTTCTTCGT 2844577 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || || |||||||| ||| | || || ||| | || Sbjct 2845046 ATGCAAATCTTTGTGAAGACCCTGACCGGTAAAACCATAACCTTGGAAGTTGAGCCTTCC 2845105 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | |||| | ||||||| || || ||||| ||||| | || ||| Sbjct 2845106 GATACTATTGAGAATGTTAAGGCCAAAATCCAAGATAAGGAGGGCATTCCACCAGATCAA 2845165 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || || ||||| |||| |||| |||||||| |||||||| Sbjct 2845166 CAACGTTTGATCTTTGCCGGTAAACAATTGGAGGACGGACGCACCCTGTCGGACTACAAT 2845225 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || |||||||| ||||| Sbjct 2845226 ATCCAAAAGGAATCAACTCTTCATTTGGTATTGCGT 2845261 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || ||||| || || | || ||||| | || Sbjct 2845274 ATGCAAATCTTCGTGAAGACCCTTACTGGTAAAACTATTACTTTGGAGGTCGAACCATCC 2845333 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| |||| | || |||| || || |||||||| || | || || Sbjct 2845334 GACACCATCGAAAACG-TTAAGGCTAAGATCCAAGATAAGGAGGGAATCCCACCAGATCA 2845392 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || ||||| |||| |||| || || | ||| ||||| Sbjct 2845393 ACAACGTTTGATCTTTGCCGGTAAACAATTGGAGGACGGACGTACTTTGTCCGATTACAA 2845452 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||||| | || || |||||||| ||||| Sbjct 2845453 CATCCAAAAGGAATCAACCCTTCATTTGGTATTGCGT 2845489 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| | ||||| ||||||||||| | || || ||| | || Sbjct 2844590 ATGCAGATTTTCGTCAAAACTTTGACGGGAAAAACCATCACTTTGGAGGTTGAGCCTTCC 2844649 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||| ||||| | || || || ||||| || | || ||| Sbjct 2844650 GATACTATTGAGAATGTCAAAGCTAAAATTCAAGATAAGGAAGGAATCCCACCAGATCAA 2844709 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | |||| ||| ||||||||| |||| || | ||||| || |||||| || Sbjct 2844710 CAACGTTTGATTTTCGCTGGCAAACAGTTGGAGGATGGACGCACACTGTCCGACTATAAT 2844769 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTT 38461 || || |||||| | || | ||||| || || || || Sbjct 2844770 ATTCAGAAGGAATCCACATTACATTTAGTTCTACGCTT 2844807 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 38320 TTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACG 38379 |||| | || |||| || || ||||| ||||| | || |||||||| | || | || Sbjct 2846963 TTAAGGCTAAGATCCAAGATAAGGAGGGTATTCCACCAGATCAACAGCGATTGATCTTCG 2847022 Query 38380 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGA 38439 | ||||| ||||| || || | || || | ||||||||| || || |||||| ||| Sbjct 2847023 CCGGCAAGCAGCTTGAGGATGGACGTACTTTGTCCGACTACAATATACAGAAGGAATCGA 2847082 Query 38440 CGCTGCATTTGGTGCTGCGT 38459 | || ||||||||||| ||| Sbjct 2847083 CACTCCATTTGGTGCTACGT 2847102 >seq558 Length=79715 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 aaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||||||||| || ||||| ||||||||||| | || || || | | Sbjct 66181 AATGCAAATTTTCGTAAAAACCCTTACGGGTAAAACCATCACTCTTGAGGTTGAACCTTC 66240 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || |||||| ||||||| || || || || ||||| | || || Sbjct 66241 GGATACTATCGAACATGTTAAAGCCAAAATCCAAGATAAGGAAGGGATTCCACCAGATCA 66300 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | |||| || || ||||| |||| || | ||||| | |||||||| Sbjct 66301 ACAGCGTTTAATTTTTGCCGGAAAACAATTGGAGGATGGTCGCACATTGGCAGACTACAA 66360 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||| | || | || || || || ||| | ||||| || Sbjct 66361 CATTCAGAAGGAGTCTACATTACACTTAGTCCTTCGTCTTAGAGGTGG 66408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500137962964480