Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq71 104 3e-17 seq162 95.1 1e-14 >seq71 Length=1348405 Score = 104 bits (114), Expect = 3e-17 Identities = 287/433 (66%), Gaps = 8/433 (2%) Strand=Plus/Plus Query 109401 CTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCAT 109460 ||||| ||| | |||||||| ||||||||||| || || ||||| | || | || || Sbjct 494675 CTTCGTGCGTAAGTAATACATGCCCGTTTTGAGTCCTGCTTTCCAACCATAAAAGTGTAT 494734 Query 109461 TGAAGAGAGTTTGGAAAGTGTCGGACTCT-CCATAAACAAGTTCATCGACTGAGACTGAT 109519 || | ||| ||| | || || ||| ||| | || | ||| || |||| Sbjct 494735 AGAGGTGAGCTTGCCATA-GTTGGGCTCGGCCACGTGTATATTGAACGATTGGCTTTGAT 494793 Query 109520 CGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCT--AATTTCCCA 109577 |||||||| |||||||| || ||||| | |||| |||| || ||| ||||| Sbjct 494794 CGATGAATGCGCCACGATCTGCAGCCATTTTGATG--GAGGTTTTCACTGAAATCTCCCA 494851 Query 109578 GACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCC 109637 ||||||||||||| || |||| | || ||| | |||||||| ||||| || Sbjct 494852 AACAGTCTTGTACAGATCGCGTATATGTTTCGGTATGGTTTCAATGTTTTGTATAGAACC 494911 Query 109638 ACCAGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATC 109697 || | | | ||| || ||||| || | ||| | ||| | || ||||||| Sbjct 494912 ACGATGTGTTATAATGGTATTTTTCATATCATCATCCCACAAACCCAACTCGGTGAGATC 494971 Query 109698 G-TCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGA 109756 | |||||| || | ||||| || |||||||| | ||| || || || | Sbjct 494972 GCGTAACAAG-TGATGATTGACAACTTGGAATTCACCCGAAAGCACACGACGTGTATAAA 495030 Query 109757 TGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTG 109816 | || | ||||| ||||| || ||||||| ||||| | |||||||| || ||||| | Sbjct 495031 TATTCGAAGTGTACGGTTCAAACGACTCATTATTGCCCATAATTTGTGCGGTAGAAGCAG 495090 Query 109817 TGGGCATGGGAGC 109829 | ||||| || || Sbjct 495091 TTGGCATCGGTGC 495103 Score = 87.8 bits (96), Expect = 2e-12 Identities = 291/446 (65%), Gaps = 15/446 (3%) Strand=Plus/Plus Query 110698 TCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTA 110757 |||||||| || | | |||| ||||||||||| ||||||| || | || || | Sbjct 495963 TCCAAAAACTCGAAAACGTCCGCATGCCATGGTTCCAGATAGATGGCAAAGGCGCCGGGA 496022 Query 110758 CG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGA 110814 || || || | || | |||||| ||||| ||| || || || ||||| || Sbjct 496023 CGCTTACCGCCACCTTGATCAACATAACGTGCCACATTATTAAACACTCTCAGCATTGGC 496082 Query 110815 ATAATTCCATCGGATTGACCATTTGTACCCCTAATT-CTGGACTTATTGGCACGAATGTC 110873 | | |||| ||| |||||||||||| |||| | | | | || || || ||| Sbjct 496083 ACTAAACCATTGGAAGTGCCATTTGTACCCGCAATTGCAGTGCCT-TTCGCGCGTATGCA 496141 Query 110874 GTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGT 110933 || | || || ||||||||| || || | || || |||||| |||| ||| Sbjct 496142 ATGCACATTCAAACCAATACCGCCTGCAGATTTGGAGATCAATGCACA----GTGA-TGT 496196 Query 110934 ACC-AT----AAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGAC 110988 || || ||||||| ||||| ||||| || ||| || |||||||| || ||| Sbjct 496197 GCCGATGTGAAAATACCGTCAATTGAATCGTCCACCATGGTAAGCAGAAAGCACGATGAC 496256 Query 110989 ATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCT 111048 | || || | || | ||| ||| || || |||| ||||| | || || Sbjct 496257 AATTGCGGTTGCTTGGTGGCAGCAGCGAATAGCGTTGGTGAGGCATGTGTAAAATAACGC 496316 Query 111049 TGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATG 111108 | || | | ||||||||| || | ||||| | ||||| ||| || ||||| ||| Sbjct 496317 TCAGAAAGCAAGTTGTATGTTTCAATTGCGGCATCAATATCTTCACCATGTATACCGATG 496376 Query 111109 GCAACTCGCATGAACATATATTGAGG 111134 ||||| ||||| ||||| | ||| || Sbjct 496377 GCAACGCGCATTAACATGTGTTGCGG 496402 >seq162 Length=508180 Score = 95.1 bits (104), Expect = 1e-14 Identities = 282/428 (66%), Gaps = 14/428 (3%) Strand=Plus/Minus Query 167357 AACCCGTACCAATACCTTCAGTACCGTTTACCAAAACCATCGGTAGAGTTGGCATGTAAA 167416 |||| || |||||||| |||| ||| || || |||||||| |||| | | || || || Sbjct 426177 AACCGGTGCCAATACCATCAGCACCATTCACTAAAACCATTGGTATAATCGGTATATACC 426118 Query 167417 AGTCGGGTTCAATGGAACGACCATCATCATCCAAGTAGTTGAG-AATGGCATCATCTTTG 167475 | | ||||||||| | ||||||||| | ||| |||| ||||| |||||| Sbjct 426117 ACTGGGGTTCAATCTTTTGGCCATCATCAACTTCGTATGTGAGCAATGG-ATCATCGGCA 426059 Query 167476 GGATCGAAGAGCTTTCGAGCCTCCTT---GGTAAGCTTC--GTAAAGATGTACCTCGT-C 167529 || | ||| | ||| ||| || || | || || || || || | | | Sbjct 426058 GGGTGGAATAT-----GAGTCTCGTTAATGGCGACATTAAAGTGAAAATATAACGAGCGC 426004 Query 167530 TGAGACGCATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGA 167589 | || ||| || |||||| || || ||||| || ||||||| |||||||| | | Sbjct 426003 TCGCACA-ATCTTTACCACCCTGTAGACGCGTACCGAACTGACCACGCGGCTCGAGTAAA 425945 Query 167590 TTGATGTTATTCGACCCCGTATAATCGTTGGCCAACTTGACGATCGTTTCAGCGAGGGAA 167649 || || ||||| || || ||| | | ||||| ||||| || || | || || Sbjct 425944 TTAATATTATTTGAGCCAACATAGTTTTGCGCCAAATTGACTATGGTGGCCTGCAGTGAC 425885 Query 167650 ACTTCGCCGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTC 167709 | || || || ||||| || | ||||||||||| | | | ||| || ||||| ||| Sbjct 425884 ATCTCTCCATGATGGTAGGCGGACATTTCAGCCACAGAACCAGACAATTGCGCAACTTTC 425825 Query 167710 ATCTCATCTTTGAGATTCTTTTGGAAACATGAATACATAACCTTGCGTTGAGAAGGTTTG 167769 | ||| |||| || | |||||| | ||||||| |||||||| ||| || Sbjct 425824 ACTTCACGTTTGTCGTTACGCTTGAAACAGGTGAACATAACTTTGCGTTGGCCAGGCTTA 425765 Query 167770 AGACCATC 167777 | |||||| Sbjct 425764 AAACCATC 425757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588934977821600