Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_015252.1 Length=36953 Score E Sequences producing significant alignments: (Bits) Value seq884 877 0.0 seq641 125 2e-24 >seq884 Length=19560 Score = 877 bits (972), Expect = 0.0 Identities = 988/1316 (75%), Gaps = 10/1316 (1%) Strand=Plus/Plus Query 358 GGGAAACGTTACGCCTTGTTTACTGACAAGCAACAACTTGAAGTGTCGGAAGTTCCAATG 417 || |||||| | || |||| |||||||| |||||| | ||||| | ||| | ||| | Sbjct 7251 GGTAAACGTCATGCGCTGTTCACTGACAAACAACAAATAGAAGTTACTGAAATGCCAGTA 7310 Query 418 TTTATAGATGATATTAGCGGTGATGATGATGGTTAA---AAGGTTGTCCGAGTTAATACC 474 ||| | |||||||| ||||||||||||||||||| || | || || ||| |||| Sbjct 7311 TTTGTTGATGATAT---CGGTGATGATGATGGTTAAGAAAAAACTATCAGAATTATTACC 7367 Query 475 TAAGCCGTTCCATTCAGTTTGGAACGCTAC-CTTAAGCGAGCAGATATTAAACATTGTGT 533 || || ||||| || |||| || || ||||| | | ||| | || ||||| | Sbjct 7368 GAAAAAATTTCATTCGGTATGGAGAGCCACTCTTAATTCGG-ACATACTCAATATTGTTT 7426 Query 534 GTAAAGGTGGTCGTGGTTCGGGTAAGTCGTCAGATATAGCTCATGTTATTACGCAATTAC 593 |||| ||||| |||||||| ||||| || |||||||| || ||| ||||||| ||||||| Sbjct 7427 GTAAGGGTGGACGTGGTTCTGGTAAATCATCAGATATCGCACATATTATTACTCAATTAC 7486 Query 594 TGATGCGTTACGCAGTTAATGCTGTTGGTATTCGTTACGTTGATAATACGCTTGAGCAAT 653 | ||| | || || || ||||| ||||| ||||| || ||||||||||| | || |||| Sbjct 7487 TTATGAGGTATGCTGTCAATGCGGTTGGCATTCGATATGTTGATAATACATTAGAACAAT 7546 Query 654 CGTTATATGAGCAAATGAAGTGGGCTATTGAACAACAGGGCGTTACACACTTGTTTAAGT 713 | | |||||||||||||| ||||| |||||||| || || || || || | ||||| | Sbjct 7547 CAATCTATGAGCAAATGAAATGGGCAATTGAACAGCAAGGGGTAACGCATCTATTTAAAT 7606 Query 714 TCAATAAATCACCTTTAAGGATCACTTATATTCCTCGTGGGAATTATATGATATTCCGAG 773 | |||||||| || || || ||||| || || |||||||| ||||||||||| ||| ||| Sbjct 7607 TTAATAAATCGCCGTTGAGAATCACATACATACCTCGTGGTAATTATATGATTTTCAGAG 7666 Query 774 GCGCTCAGAACCCTGAACGTATTAAGTCACTTAAAGATAGTAAGTTTCCTTTTGCTATCG 833 | || || || |||||| | || ||||| | ||||||||| ||| || ||||| || | Sbjct 7667 GTGCCCAAAATCCTGAAAGAATCAAGTCTTTAAAAGATAGTCGGTTCCCGTTTGCGATTG 7726 Query 834 GTTGGATTGAAGAGTTAGCAGAGTTTAAAAATGAAGAAGAAGTCACGACTATTACCAACT 893 | |||||||| ||||||| |||||||||| |||||| ||||| ||||| |||||||| | Sbjct 7727 GCTGGATTGAGGAGTTAGGCGAGTTTAAAACTGAAGATGAAGTAACGACCATTACCAATT 7786 Query 894 CGCTTTTACGTGGGGAATTAGGTAATGGTCTTTTTTATAAGtttttttACAGTTATAACC 953 | ||||||||||| |||||||| ||||||||||||||||| || |||| ||| || |||| Sbjct 7787 CACTTTTACGTGGTGAATTAGGAAATGGTCTTTTTTATAAATTCTTTTTCAGCTACAACC 7846 Query 954 CTCCCAAAAGGAAACAATCATGGGTTAACAAGAAGTACGAGACTAGTTTTCAACCCGAAA 1013 | || ||| | |||||| ||||| |||||||| || || ||||||| ||||| || | Sbjct 7847 CGCCAAAACGTCGACAATCTTGGGTGAACAAGAAATATGAATCTAGTTTCCAACCTGATA 7906 Query 1014 ATACATTCGTTCATCATTCAACGTACAAGGACAACCCTTTTATAGCTAAAGAGTTCTTGA 1073 ||||||| |||||||| || || || || || || |||||||| | | ||| ||||||| Sbjct 7907 ATACATTTGTTCATCACTCTACTTATAAAGATAATCCTTTTATTTCGAGAGAATTCTTGA 7966 Query 1074 AAGAGGTTGAAGCAGCAAGAGAACGCAATCCTAGACGTGCTGAGTGGGAGTATGACGGTA 1133 |||| || || ||||||||||| | |||||| |||||| ||||| || || ||| Sbjct 7967 AAGAAGTGGAGGCAGCAAGAGATAGAAATCCTTTTCGTGCTAGATGGGAATACGATGGTG 8026 Query 1134 AGGCTATTGGTTCGGGAGTTGTACCATTCGATAATCTCAAAGTTGTTGCTGGGTCAATTA 1193 | || || ||||| ||||| || |||||| ||| | ||||| | || | || | Sbjct 8027 AAGCAATCGGTTCTGGAGTCGTTCCATTCAGTAACTTAAAAGTGGAGAAAGGCTGTATAA 8086 Query 1194 CCGATGATATGACTGCTAATTTTGACAACGTAAGAAACGCAGTCGATTTTGGGTATGCAA 1253 | ||||| ||| |||||| ||||| || | ||||||| | || || || ||||| | Sbjct 8087 CTGATGAAATGGTTGCTAACTTTGATAATATCAGAAACGGTCTTGACTTCGGTTATGCTA 8146 Query 1254 CTGACCCGCTCGCTTTTGTCCGTTGGCATTACGATAAGAAACATAATTGCATCTATGCGA 1313 |||| || | || || || || ||||| |||||||||||| | ||| |||||||||| Sbjct 8147 CTGATCCATTAGCATTCGTACGATGGCACTACGATAAGAAAAAGAATGGCATCTATGCTG 8206 Query 1314 TTGAAGAGTATTTTGGGCAAAAGATTAGTAATCGTCAGTTTGCTAAGTGGGCCCAATCGA 1373 |||| || | ||| || || ||||||||| ||||||| | ||| || | | Sbjct 8207 TTGATGAAATCTATGGAGTGAAAATCAGTAATCGTGAGTTTGCCCAAAAGGCGAAAGCAA 8266 Query 1374 AAGGTTATCAATCTGAT-GAAATATATGCAGATAGCGCAGAGCCTAAGTCGATTGCAGAG 1432 |||||||||| |||||| | | | || | ||| ||||| ||||| || || ||||| Sbjct 8267 AAGGTTATCAGTCTGATCGTATTGCAT-CGGATTCAGCAGAACCTAAATCCATAGCAGAA 8325 Query 1433 TTAAGGCAAGAACACAGTATGCCGAGAGTAATCGGTGTTAAGAAAGGCCCTGACAGCGTT 1492 || | | |||||| | ||| ||| | || ||||| |||||||| ||| || Sbjct 8326 TTGAACAATGAACACGGAATGAGCCACGTATTTGGGGTTAAAAAAGGCCCCGACTCTGTG 8385 Query 1493 GAGTATGGTGAGGAGTGGCTAGATGATTTAGATGCCATTTATATTGATCCGATTAGAACG 1552 ||||||| ||||| ||| | |||||||| ||| |||| ||| || || | ||||| Sbjct 8386 CAGTATGGCGAGGAATGGTTGGATGATTTGGATTTTATTTGTATCGACCCACTAAGAACT 8445 Query 1553 CCTAACATTGCAAGAGAATTTGAAAACATCGACTACCAAACTGACAAAGATGGCAATCCT 1612 || || || || | ||| ||||||||||| || || || || || ||||||||||||||| Sbjct 8446 CCAAATATAGCCAAAGAGTTTGAAAACATTGATTATCAGACGGATAAAGATGGCAATCCT 8505 Query 1613 AAGCCACGTTTAGAAGATAAAGACAATCACACGATAGATGCAACACGTTACGCTTT 1668 |||||| | | ||||||||||| || ||||| || ||||||||| | |||||||| Sbjct 8506 AAGCCAAGGCTTGAAGATAAAGATAACCACACAATCGATGCAACAAGATACGCTTT 8561 Score = 181 bits (200), Expect = 3e-41 Identities = 355/522 (68%), Gaps = 2/522 (0%) Strand=Plus/Plus Query 8905 TTTGAAAACATGGGCTTTAAAACAAAAGAGATCACAGGGACGATGGAT-GCTTTAAAAGG 8963 |||||||| ||||||||| | | | || | || ||| |||||| |||| || | | Sbjct 16703 TTTGAAAATATGGGCTTTTCAGCTAGTGAAACATCAAAGACAATGGATAGCTTAAAGAAG 16762 Query 8964 AAGTATTCAAGGTTTGCCAACGCCTTTAGATGGAGCTATAAAAAACGTTCAATTGTTAGC 9023 | |||||||||| || || || || ||||| | || || ||| |||||||| | || Sbjct 16763 A-GTATTCAAGGATTACCCACACCATTAGACAGCGCAATTAAAGGTGTTCAATTAATTGC 16821 Query 9024 TGCTTCTACGGGTGATTTAGGTAAATCTCAAGAAGTGTTCGCAGCGATGAACAACGCTAT 9083 | | ||||| ||| ||||| ||||| || | | |||||||| | || || | ||| Sbjct 16822 TTCGTCTACAAATGACTTAGGAAAATCAGAACAGATTTTCGCAGCTTTAAATAATGGTAT 16881 Query 9084 ATTAGGATTCGGCGGAACAACAGATCAAGTCCAAAATACAGTTACTCAGCTGTCTCAAGC 9143 | || || || || | |||| || | ||| | | | ||||| || ||| | Sbjct 16882 CCTCGGCTTTGGTGGGTCTGCAGAGATGGTAGACAATGCGATCATCCAGCTATCACAATC 16941 Query 9144 GTTATCTAATGGCAAGGTCGATGCTGAGACGTGGAACTCTATGATAAATGGCGGCATGGG 9203 || || ||||| || || ||||| | || |||||||| ||||| || | || |||| Sbjct 16942 ATTTTCAAATGGTAAAGTAGATGCGCAAACTTGGAACTCAATGATTAACAGTGGTTTGGG 17001 Query 9204 TCCAACACTTAATGCATTAGCTAAGACATTCAAAATGACAACTGGCGAAATGAAAGCAGC 9263 ||| | || || |||||||| || | | | || |||| | ||||||| || Sbjct 17002 CCCAGCTCTAAACGCATTAGCGAAACAAATGGGGTTAACTGCTGGTCAGATGAAAGAAGG 17061 Query 9264 ACTATCAGACGGTACAATTTCAGTTGAACAATTTCAAGATAGCCTAATTCAGTTAAATGA 9323 || || || ||| |||||||||||||| |||||||||| |||||| | || ||| | Sbjct 17062 TCTCTCTGATGGTTCAATTTCAGTTGAAGAATTTCAAGACTCTCTAATTAAATTGAATAA 17121 Query 9324 AAAAGGCGGTGGCGGATTGAAACCTTTGGCCAAGATCGCACAAGATGCTATGGGCGGTAT 9383 | |||||||||| || | ||| | || | |||| || |||| ||| | ||||| Sbjct 17122 AGAAGGCGGTGGAGGCCTTAAATCGTTAGAGCAGATTGCTAAAGACTCTACTGCAGGTAT 17181 Query 9384 TAAAACTGGTGTATCTAACGCAAAAACAGCAGTAGTTCGAGG 9425 |||||| || | ||||| ||||| || | ||||| || Sbjct 17182 TAAAACCGGATTGGCTAACATGAAAACTGCGATTGTTCGTGG 17223 Score = 125 bits (138), Expect = 2e-24 Identities = 225/324 (69%), Gaps = 10/324 (3%) Strand=Plus/Plus Query 32039 ATGATGAATCGAGTTGTTTTAGTGGGCCGTTTAACAAAGGACCCCGAATTGAAATATACA 32098 ||||| || | |||||| ||||| || |||||||| || || || || | |||| Sbjct 799 ATGATAAACCAAGTTGTGTTAGTTGGACGTTTAACGAAAGATATAGATTT--ACGCTACA 856 Query 32099 CCTGCAGGAG---CAGCAGTTGCCACATTTACACTAGCTGTAAATCGTACGTTTACGAAT 32155 || ||| | | | ||||||| | ||||| || ||||| || |||| ||||| || Sbjct 857 CC-GCAAGTGGTTCTGCAGTTGGAAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAAC 915 Query 32156 CAGCAAGGTGAGCGTGAAGCTGATTACATTAACTGTGTCGTTTGGCGTAAGGCTGCCGAA 32215 || | || || || ||||| |||| || |||||||| ||||||||||| |||| ||| Sbjct 916 CAAAACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTTGGCGTAAGCCTGCTGAA 975 Query 32216 AGCGTAGCTAA--CTACTTGAAAAAAGGAAGTTTAGCAGGTGTTGATGGTCGATTACAAA 32273 | | ||||| |||| | ||||||| ||| ||| |||| ||| || | |||| Sbjct 976 ACAATGGCTAATTATACTCG--TAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAA 1033 Query 32274 CACGTAACTATGAAGGCAATGACGGTAAGCGTGTATATGTGACAGAGGTCATTGCGGAAA 32333 | ||||| ||||| | | | || | ||||| |||||||| || || || || | Sbjct 1034 CTCGTAATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGA 1093 Query 32334 GTGTACAGTTCCTAGAGCCTAAAA 32357 || | || || ||||||| |||| Sbjct 1094 GTTTCCAATTATTAGAGCCAAAAA 1117 >seq641 Length=27874 Score = 125 bits (138), Expect = 2e-24 Identities = 225/324 (69%), Gaps = 10/324 (3%) Strand=Plus/Minus Query 32039 ATGATGAATCGAGTTGTTTTAGTGGGCCGTTTAACAAAGGACCCCGAATTGAAATATACA 32098 ||||| || | |||||| ||||| || |||||||| || || || || | |||| Sbjct 27076 ATGATAAACCAAGTTGTGTTAGTTGGACGTTTAACGAAAGATATAGATTT--ACGCTACA 27019 Query 32099 CCTGCAGGAG---CAGCAGTTGCCACATTTACACTAGCTGTAAATCGTACGTTTACGAAT 32155 || ||| | | | ||||||| | ||||| || ||||| || |||| ||||| || Sbjct 27018 CC-GCAAGTGGTTCTGCAGTTGGAAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAAC 26960 Query 32156 CAGCAAGGTGAGCGTGAAGCTGATTACATTAACTGTGTCGTTTGGCGTAAGGCTGCCGAA 32215 || | || || || ||||| |||| || |||||||| ||||||||||| |||| ||| Sbjct 26959 CAAAACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTTGGCGTAAGCCTGCTGAA 26900 Query 32216 AGCGTAGCTAA--CTACTTGAAAAAAGGAAGTTTAGCAGGTGTTGATGGTCGATTACAAA 32273 | | ||||| |||| | ||||||| ||| ||| |||| ||| || | |||| Sbjct 26899 ACAATGGCTAATTATACTCG--TAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAA 26842 Query 32274 CACGTAACTATGAAGGCAATGACGGTAAGCGTGTATATGTGACAGAGGTCATTGCGGAAA 32333 | ||||| ||||| | | | || | ||||| |||||||| || || || || | Sbjct 26841 CTCGTAATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGTTTGCGAGA 26782 Query 32334 GTGTACAGTTCCTAGAGCCTAAAA 32357 || | || || ||||||| |||| Sbjct 26781 GTTTCCAATTATTAGAGCCAAAAA 26758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118120183765560