Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_015254.1 Length=41518 Score E Sequences producing significant alignments: (Bits) Value seq273 147 6e-31 seq641 105 2e-18 seq884 91.5 4e-14 >seq273 Length=32108 Score = 147 bits (162), Expect = 6e-31 Identities = 251/359 (70%), Gaps = 4/359 (1%) Strand=Plus/Minus Query 33253 ATGTCAGACAGCAAAAAATATTACTATTTGAAGTTGAAAGAAAGTTTTTTCGATTCAGAC 33312 ||| |||||| ||||||||||||||| | || | ||||| | |||||||||| || Sbjct 24895 ATGGCAGACAATAAAAAATATTACTATCTCAAACTCAAAGATAATTTTTTCGATAGTGAT 24836 Query 33313 GAGATGAAAGTATTGGAAGCTATGCCAGACGGTCATAAGTACAGCAACATCTTGTTAAAG 33372 || |||| || | ||| |||||| || ||| ||| || ||| ||||| ||||| Sbjct 24835 GAAATGATTGTGCTAGAAAGTATGCCCGATGGTTATATCTATTCCAATATCTTATTAAAA 24776 Query 33373 CTATATCTTAAAAGCCTTAAAAACGAAGGCAAGTTGATGCTTAACGACCATATCCCTTAC 33432 || ||| | | ||| | ||| | ||||| | ||| ||||||| || || | | Sbjct 24775 CTTTATTTAAGAAGTTTGAAATATGAAGGGCGCCTAATGTTTAACGAAAGGATACCATTC 24716 Query 33433 AACACAGCGATGTTAGCGACTA-TCACCAATCATTCTGTTGGAGATGTTGAAAGAGC-AT 33490 ||| || | ||| || | || | | || | ||| ||||||||||| |||| ||| || Sbjct 24715 AACTCAACAATGCTATC-ACAAGTGACGAGGCATAGCGTTGGAGATGTCGAAAAAGCAAT 24657 Query 33491 TGAATATATTAGAAAGTTTATCTCTAATTGAAGTTTTAGACAACGGATCAATTTACATGT 33550 | | ||||| | |||| || ||||| |||||||| || ||| ||||||| |||| Sbjct 24656 ACAGGTTTTTAGAGA-TTTAGAGCTCATTGAGGTTTTAGATAATGGAGCAATTTATATGT 24598 Query 33551 TGGATATTCAAACGTTAATCGGTAAATCTAGTTCAGAGGGTGACAGAAAAAAGGCTTAT 33609 | ||||| |||| || || || |||||| |||| | || ||||||| || |||| Sbjct 24597 TAGATATCCAAAATTTTATTGGAAAATCTTCAACAGAAGCAGATAGAAAAAGGGATTAT 24539 >seq641 Length=27874 Score = 105 bits (116), Expect = 2e-18 Identities = 234/346 (68%), Gaps = 4/346 (1%) Strand=Plus/Minus Query 25984 CCGAAAGAGGTTGATGTATCAAAACTTTCTTGCATAGATGTGAATTGCACATGATT-CTT 26042 || |||| ||| ||||||||||||||||||||||| || | | || || | ||| | Sbjct 8050 CCAAAAGCGGTAGATGTATCAAAACTTTCTTGCATTGAAATAAGTTCAACGTCATTAGGT 7991 Query 26043 AAGAAATACATCTTCAATAAGGAACAATGTGTTTTTCTGAGAACGACTCAGTCTATCCAG 26102 |||| | ||||||||| | | ||| || | ||| ||||||||| || | ||| || Sbjct 7990 CTGAAA-ATATCTTCAATTAAGTACATAGTATCTTTTTGAGAACGAGAGAGACGATCGAG 7932 Query 26103 TTTATATACTAGAACAACATCTATTTCTTTAGATTCTATGGATTTAATCATATTTTGAAG 26162 ||||| || | ||| || || | || |||||||| || | || |||| | ||| | Sbjct 7931 CTTATAGACAATAACTACGTCAACTTTTTTAGATTGTACGTCTTGGATCAGCTCTTGCAT 7872 Query 26163 TCCTGGTCGTTCCAACTTAGCTCCACTGTAACCAGGATCAGTAAAAACTTT-TACAACTT 26221 | |||| ||||| || || | | || ||||| | ||| || | ||| || || | Sbjct 7871 TGCTGGCCGTTCTAATTTTGAAGCGCTATAACCCGCATCGATATACTTTTTGTATAAAAT 7812 Query 26222 GATAATCTTTAGCATTTGCGTAACTTTTTAATTTTTCTGTTTGAGCAGAGATAGAATATC 26281 | | ||||| || | |||| || | | | | || ||||| || || || |||| Sbjct 7811 -AAAGTCTTTGGCTTCAACGTATTTTGTCAGTCTATCGGTTTGGGCTTGAATCGAGTATC 7753 Query 26282 CTTCCTCAGCTTGTTCCATTGTCGATACTCGTACATATATTGCAGC 26327 |||| |||||||| || ||||| |||| ||| || || || Sbjct 7752 CTTCAGTTGCTTGTTCTTGAGTGGATACACGTATATAGATAGCTGC 7707 >seq884 Length=19560 Score = 91.5 bits (100), Expect = 4e-14 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 1841 GAACGCCTAACATTGCAAGAGAATTTGAAAACATCGACTATGAAACTGATAAAGATGGAA 1900 |||| || || || || | ||| ||||||||||| || ||| | || ||||||||||| | Sbjct 8441 GAACTCCAAATATAGCCAAAGAGTTTGAAAACATTGATTATCAGACGGATAAAGATGGCA 8500 Query 1901 ATCCTAAGCCGCGGCTAGAAGATAAAGACAATCAC 1935 |||||||||| |||| ||||||||||| || ||| Sbjct 8501 ATCCTAAGCCAAGGCTTGAAGATAAAGATAACCAC 8535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132727217190720