Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq63 95.1 1e-14 >seq63 Length=1519379 Score = 95.1 bits (104), Expect = 1e-14 Identities = 170/243 (70%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 159539 TGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGAC 159598 |||| ||| | ||||| || || ||||| ||| |||||||||| | |||| | | Sbjct 730051 TGTCCTGTCTGATGATCACCTACCCATCCACAATGGGTGTATTTG-AGGAAACGGTTG-C 730108 Query 159599 AGATATGTAAGA-TTG-TTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCT 159656 ||||| | || ||| | || || |||| || ||||||||| | ||||| || ||| | Sbjct 730109 TGATATATGTGACTTGATACACAAGCATGGCGGACAGGTATATTTGGATGGCGCTAATAT 730168 Query 159657 AAATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAA 159716 ||||| ||||| ||||| || | || || || ||||| | ||| | || Sbjct 730169 GAATGCGCAGGTGGGTCTGTGTCGTCCCGGCGATTACGGCAGCGATGTCTCTCACTTGAA 730228 Query 159717 CTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGG 159776 |||| ||||| |||||||| || ||||| ||||| ||||| || | ||||| || || Sbjct 730229 TCTACACAAGACTTTCTGTATACCTCATGGCGGTGGTGGTCCCGGTATGGGTCCCATCGG 730288 Query 159777 TGT 159779 ||| Sbjct 730289 TGT 730291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588010242233920