Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq10 143 6e-29 seq48 120 7e-22 seq558 96.9 8e-15 >seq10 Length=3877145 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || | |||||| || ||||| ||||| || ||||| |||| | || | Sbjct 2845036 GAGACGCAATACCAAGTGAAGTGTTGACTCCTTTTGGATGTTGTAGTCGGACAATGTGCG 2844977 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || || || | ||||| || ||||| || | |||||||| ||||| ||||| || || Sbjct 2844976 TCCGTCCTCCAATTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGGGGAATACCCTC 2844917 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 |||||||||||||||| || ||||| || || || || ||| ||| || || || || Sbjct 2844916 TTTGTCTTGAATTTTTGCTTTAACGTTTTCGATTGTATCAGAAGGTTCAACCTCCAGAGT 2844857 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||||| ||||| ||||| ||||| | |||||| Sbjct 2844856 AATTGTTTTTCCCGTCAATGTTTTAACGAAGATTTGCAT 2844818 Score = 125 bits (138), Expect = 2e-23 Identities = 153/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||| || ||||| || || || |||||||||| |||| || | || ||||| || || Sbjct 2844564 TGAAGTGTAGACTCCTTCTGGATGTTGTAATCGGACAAG-GTACGTCCGTCTTCCAGTTG 2844506 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||||| || ||||| | |||||||| ||||| || || ||||||||||| ||||| || Sbjct 2844505 TTTACCGGCAAAGATTAAACGTTGTTGATCTGGGGGGATTCCTTCTTTGTCCTGAATCTT 2844446 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || || ||||| || || || ||| || || || || | ||||| || || Sbjct 2844445 AGCTTTAACATTTTCAATAGTATCGGATGGTTCAACCTCCAGAGTGATGGTCTTGCCAGT 2844386 Query 195117 CAAAGTTTTTACGAACACTTGCATTT 195142 ||| || || ||||| | |||||||| Sbjct 2844385 CAAGGTCTTCACGAAGATTTGCATTT 2844360 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||| || || |||||||| || |||| || || | ||||| || | ||| || || Sbjct 2844786 GTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCCTCCAACTGTTTGCCA 2844727 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 ||||| || | |||||||| ||||| || || ||||| || ||||||||||| ||| Sbjct 2844726 GCGAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATCTTGAATTTTAGCTTTG 2844667 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || |||||||| || || ||| || || || | || | || ||||| ||||||||| Sbjct 2844666 ACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTTCCCGTCAAAGTT 2844607 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | ||||| Sbjct 2844606 TTGACGAAAATCTGCAT 2844590 >seq48 Length=1730007 Score = 120 bits (132), Expect = 7e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTG 194996 || || || ||||| ||||| || ||||| |||| |||| || | |||||||| | || Sbjct 776874 TGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAG-GTGCGACCATCTTCCAATTG 776816 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || |||||||| | || ||||| ||||| || || || ||||||||||||||||| Sbjct 776815 TTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGGATACCCTCTTTGTCTTGAATTTT 776756 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||| || || |||||||| || || || || | ||| | ||||| || || Sbjct 776755 AGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCTAAGGTGATGGTCTTACCAGT 776696 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 || ||||| ||||| | |||||| Sbjct 776695 TAATGTTTTGACGAAAATCTGCATT 776671 >seq558 Length=79715 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||| || ||||| ||||| || || | || | ||||| || | || || || Sbjct 66378 GTAGACTCCTTCTGAATGTTGTAGTCTGCCAATGTGCGACCATCCTCCAATTGTTTTCCG 66319 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || | || ||||| ||||| ||||| ||||| || ||||| ||||| || Sbjct 66318 GCAAAAATTAAACGCTGTTGATCTGGTGGAATCCCTTCCTTATCTTGGATTTTGGCTTTA 66259 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || | || || || |||||| ||| || ||||| || | || || || || | ||| Sbjct 66258 ACATGTTCGATAGTATCCGAAGGTTCAACCTCAAGAGTGATGGTTTTACCCGTAAGGGTT 66199 Query 195124 TTTACGAACACTTGCATT 195141 |||||||| | ||||||| Sbjct 66198 TTTACGAAAATTTGCATT 66181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109402392721724