Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq10 95.1 8e-15 >seq10 Length=3877145 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| || || | |||| ||| |||||||| |||||||| || || | ||| |||| || Sbjct 2844799 AACTAAATGTAATGTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCCTC 2844740 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || |||||| || || || || | ||||| || ||| | || | || ||||| || Sbjct 2844739 CAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATCTTG 2844680 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||| || |||||| || || || | || | |||||| || | || |||||| Sbjct 2844679 AATTTTAGCTTTGAC--ATTCTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTT 2844622 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||||||| | ||| || || || ||||||||| Sbjct 2844621 TTTCCCGTCAAAGTTTTGACGAAAATCTGCATA 2844589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324611554538016