Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq7 313 3e-80 seq71 306 4e-78 >seq7 Length=4380649 Score = 313 bits (346), Expect = 3e-80 Identities = 471/664 (71%), Gaps = 4/664 (1%) Strand=Plus/Plus Query 18832 CAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTT 18891 |||||||| || ||||| || || || | || || || | |||||||| || || || Sbjct 4094607 CAATTCATACCAATTAAATTTACGGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTTTA 4094666 Query 18892 ACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTA 18951 || || || || || || | || || || | | | || | || | ||||| | Sbjct 4094667 ACAGCTTCGGAAATGATTTCAATAATTCGTTCATTACTTGGCTTCTGTATCAAATGTTGA 4094726 Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011 |||||||||||||| ||||||||||| || |||||||||| || | ||||| ||| Sbjct 4094727 AACATCAAACATGCGAAATCACAATGCAGACCCTCGTCTCGTGAGATTAGCTCATTGGAA 4094786 Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 || ||||| |||||||| | || | |||||| | |||||| || || ||||| |||| Sbjct 4094787 AACGTTAAGCCAGGCATTAAACCACGTTTTTTAAGCCAGAAGATCGACGCAAAACTTCCA 4094846 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 || || |||||||| || |||||||| |||| || | ||| ||| | | || Sbjct 4094847 CTGAAAAAAATACCTTCCACAGCTGCAAATGCAATTACACGTTCACCAAAGTTTGCCGAC 4094906 Query 19132 TTATTATGAA-TCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTC 19190 || | | ||| |||| ||||||||||| ||||| ||||| ||||| || || Sbjct 4094907 TT-TGAGGAAATCCAAGCAAGTGCCCAATCTGCCTTACGCTTTACGGCAGGCATCGTTTC 4094965 Query 19191 TATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAA 19250 |||| ||| |||| ||| | | | | | ||| |||| ||||| ||| || |||| Sbjct 4094966 AATAGCATTGAATAAATAGTTCCTTTGTTTCGAATCCTTAATATATGTATCGATTAATAT 4095025 Query 19251 ACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGC 19310 ||| |||||||| ||||| | || || ||||| || |||||||| || ||||| | ||| Sbjct 4095026 ACTATACATTTCGGAATGCACGTTCTCCATAGCAATTTGAAATCCATAGAAACAACGTGC 4095085 Query 19311 TTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATC 19370 ||||| | || || || || |||| ||| || ||||| |||||||| || ||||| Sbjct 4095086 CTCTGTAACTTGGACCTCCTGACTGAATCGTTCAACTAAATTCTCATTAACAATACCATC 4095145 Query 19371 ACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCA-TCTGAGGTTAATG 19429 | || |||||||| |||||||| ||| || ||||| |||| | | || | | Sbjct 4095146 AGATGCGGCAAAAAAGGCTAATACGTGTGAGATGAAATGCCGTTCATTGTCAGTGAGACG 4095205 Query 19430 TATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCT 19489 | |||||||| ||||||||||| | ||| ||||| |||||||||||||| || || | Sbjct 4095206 T-GCCCAATCATCCATATCTTTAGAAAGATCCACTTCCTCAACTGTCCAAAACGACGCTT 4095264 Query 19490 CTGC 19493 |||| Sbjct 4095265 CTGC 4095268 >seq71 Length=1348405 Score = 306 bits (338), Expect = 4e-78 Identities = 982/1524 (64%), Gaps = 47/1524 (3%) Strand=Plus/Plus Query 47313 TGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTA 47372 ||| |||| |||| ||| ||||| || || || || | ||| |||| ||||| || Sbjct 494982 TGATGATTGACAACTTGGAATTCACCCGAAAGCACACGACGTGTATAAATATTCGAAGTG 495041 Query 47373 TATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGAT 47432 || ||||| | || |||||||| || | |||||| || || || || || ||||| | | Sbjct 495042 TACGGTTCAAACGACTCATTATTGCCCATAATTTGTGCGGTAGAAGCAGTTGGCATCGGT 495101 Query 47433 GCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAA 47492 |||| || || || | ||| |||| || | ||| | |||| Sbjct 495102 GCAAGCAACAATGAGTTGCGTACACCATGTTGCTTTATTTTCTCCTTCAATTCGGTCCAG 495161 Query 47493 TCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATC 47552 | ||| ||||| | ||| || ||| | |||||||| || || || || || | Sbjct 495162 TTCCAGAGATCAGTTGGCGTTTTATCCCACATGTCATATTGTAGTATACCCTTGCTGACT 495221 Query 47553 GGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCC 47612 || ||||| | |||||| | |||| || ||| || ||| | ||||||||| |||||| Sbjct 495222 GGTGAACCTTCATATGTCTCGTAAGTGCCATATTTTTCAGCCAATTCACAACTGGCTTCC 495281 Query 47613 AATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCT-TGCTTCTGATGA 47671 ||||| | ||| || || ||||| ||||||| | || || | | ||| || || | Sbjct 495282 AATGCGCCATAGTAAATAGTTTCGAATATTTGT-TGATTCAACAAGTATGCCTC--ATCA 495338 Query 47672 --TTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCA 47729 ||| | ||| | || | || || || ||||| | ||||||||| Sbjct 495339 CTTTCGTATGGAAAACGCATTAAAATTAAGGCGTCGGCAAAACCTTGTATGCCAATACCA 495398 Query 47730 ATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCT 47789 || || | ||| ||| || || || || ||||| ||||| | || | ||| Sbjct 495399 ATGGGACGATGTCGCAAATTCGATTTCTTGGCCTCCGGTAAGGGATAATGATTGACGTCT 495458 Query 47790 ATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATT---TA------ 47840 || ||||| || | | ||||||| | | | || || Sbjct 495459 ATGATTTTGTTCAAATTACGCGTA---------ACAATTTTTGTGACTTCTTTAAGCCGT 495509 Query 47841 TTAAAATCAAACTTGTTATTTA---TAACAAACCTATTAAGTGCTATAGATGCTAGATTA 47897 ||||| ||| || | |||| | | ||| || | || | |||||| || |||| ||| Sbjct 495510 TTAAAGTCATACGTTTTATCTGGTGTGACATACATGTTCAATGCTATTGAGGCTAAATTG 495569 Query 47898 CATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACAT 47957 || ||||||||||| | || | ||||| | ||||| | ||| | ||||| |||| Sbjct 495570 CAAACAGCTACCTCGTCGGGTGCGGAATATTCAACAATTTCGGTACACAAATTACTACAT 495629 Query 47958 TTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATA 48017 || || || || | ||| || |||||| | | || || || || || || | ||| Sbjct 495630 TTAATCGTGCCAATATTCTGCTGATTACTCTTTCTATTGCAAGCATCTTTATACAACATG 495689 Query 48018 AAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACA----GTCCT--A 48071 | ||||| || || |||| ||| |||||||| || | ||||| | || || | Sbjct 495690 TACGGTGTGCCGGTCTCTACCTGCGATTCAATAATGGCAAACCAAAGACTTTGTGCTTTA 495749 Query 48072 GCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAAT 48131 |||| || ||| | ||| | ||||| ||||| |||||| ||||| || Sbjct 495750 ACCTTCTTATTAGCACGTCCTT------CTTGTTCATATTTCTCATATAATTTCTCGAAC 495803 Query 48132 TCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCC 48191 || || || | || | || ||| || ||||| | || |||||||| | ||||| || Sbjct 495804 TCTTCACCCCATACTTCATGTAAACCCGGACACTTATGTGGACACATTAGCGACCAGTCT 495863 Query 48192 TCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA-AATAAATC 48250 ||||| || || | |||||||| ||| |||||||| | || ||| |||||||| Sbjct 495864 TCATCGGCTTCGACACGTCGCATAAATAGATCCGGTATCCACAAGGC-ATAGAATAAATC 495922 Query 48251 CCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATC 48310 || | | | ||||| |||||| |||| | || | || | ||| || | | || Sbjct 495923 TCTTGCGCGATGCTCTTCTTTGCCAGTATTTTTCTTCAAATCCAAAAACTCGAAAACGTC 495982 Query 48311 AGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATC 48370 |||||||||||||| | ||| || || | | || || || ||| || |||||||| Sbjct 495983 CGCATGCCATGGTTCCAGATAGATGGCAAAGGCGCCGGGACGCTTACCGCCACCTTGATC 496042 Query 48371 TATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACC 48430 | ||| | || ||| ||| | ||||| | |||||| || | |||||| || | || Sbjct 496043 AACATAACGTGCCACATTATTAAACACTCTCAGCATTGGCACTAAACCATTGGAAGTGCC 496102 Query 48431 ATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT--ATTACTAATTGAAATACCTATA 48488 ||| || |||| ||| | | || | || | ||| | | | ||| || ||| ||| Sbjct 496103 ATTTGTACCCGCAATTGCAGTGCCTTTCGCGCGTATGCAATGCACATTCAA--ACCAATA 496160 Query 48489 CCACCTGCCATTTTAGATATTAGAGCACACCG-TTTAAGGGTATCATAAATTCCTTCTAT 48547 || ||||| ||| || || | ||||| | | | | | | | |||| || || || Sbjct 496161 CCGCCTGCAGATTTGGAGATCAATGCACAGTGATGTGCCGATGTGA-AAATACCGTCAAT 496219 Query 48548 ACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGA 48607 ||| || | ||| | | ||||| || |||| |||||| || || | | Sbjct 496220 TGAATCGTCCACCATGGTAAGCAGAAAGCACGATGACAATTGCGGTTGCTTGGTGGCAGC 496279 Query 48608 ATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTC 48667 | |||| ||||| || ||||| |||| | ||| || | ||| || |||||||| Sbjct 496280 AGCGAATAGCGTTGGTGAGGCATGTGTAAAATAACGCTCAGAAAGCAAGTTGTATGTTTC 496339 Query 48668 AATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTG 48727 ||| | | ||| ||||| ||||||||| || | || ||||||||||| | ||| Sbjct 496340 AATTGCGGCATCAATATCTTCACCATGTATACCGATGGCAACGCGCATTAACATGTGTTG 496399 Query 48728 AGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAA 48787 || | |||||||||||| ||| | || | | ||| || ||| | ||||||||| Sbjct 496400 CGGACGCTCAACAATTTTGCCATTCAACTTGAGCAAATACGAACGTTCGAGTGTTTTAAA 496459 Query 48788 ACCAAAATAGTTGTATGAAAAGTC 48811 ||||||||| || || |||||| Sbjct 496460 ACCAAAATAATTATAACCAAAGTC 496483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562069649122080