Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_016161.1 Length=38013 Score E Sequences producing significant alignments: (Bits) Value seq1321 109 1e-19 >seq1321 Length=4872 Score = 109 bits (120), Expect = 1e-19 Identities = 201/292 (69%), Gaps = 2/292 (1%) Strand=Plus/Minus Query 26118 AACTTAACCTTGACCTTATCACCGGCTTTAATATCATGCTTGGGCGTCTTCTCGGCGTCT 26177 || || || || || |||| ||| |||||| ||| | ||||| || ||| | | | Sbjct 2666 AATTTCACTTTAACAGTATCGCCGACTTTAACATCGGAACTTGGCGTATTTTCGACTTTT 2607 Query 26178 TTACCGACATTAATGGCTGGTGTGCTGGCGTGCGGCTTG-TTGTTCTTAGTGTAGCCGTT 26236 | || ||| ||| ||||||||| | | ||| | ||| || ||||| || || || || Sbjct 2606 TCCCCTGCATCAATTGCTGGTGTGTTTGT-TGCTGGTTGGTTATTCTTTGTATAACCATT 2548 Query 26237 ATCGGTGATTCCGGTTAGGTCAATGTTACCATCAAGCCCGCCGCCAATGTACGTGCTAGT 26296 ||| || || || |||| |||| ||||||||| ||||| || ||| ||| || || Sbjct 2547 ATCAGTAATACCTGTTAAATCAACGTTACCATCTAGCCCTCCTGCAACGTAGGTTGACGT 2488 Query 26297 GAACTGGAACAGCGCCACGTTTTCCCATGACGGGAAAAAGTTATAGTTAGGTTTCGGCGT 26356 |||||| || | | | ||||| |||| || ||| | || || || || | || || Sbjct 2487 GAACTGAAAAATACCGATATTTTCAAATGAAGGAAAATAATTGTAATTTGGATAAGGTGT 2428 Query 26357 TACCTTGTAGTCTGGATATTCGCCTAGCCATAATTTGTACGTTTTAGAAATT 26408 || | || ||||||||||| | | |||||||| ||| | || | |||| Sbjct 2427 CACTTCATAATCTGGATATTCTGCCATCCATAATTGATACTTCTTTGCAATT 2376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 121511959325400