Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq7 244 1e-59 >seq7 Length=4380649 Score = 244 bits (270), Expect = 1e-59 Identities = 473/690 (69%), Gaps = 6/690 (1%) Strand=Plus/Plus Query 37010 ATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTTAC 37069 ||| || ||||||||||| || | ||||| || | || |||||||||| ||||| Sbjct 4094570 ATCAGCCACAAATTCTATATAATCGGACATTGATTTGCAATTCATACCAATTAAATTTAC 4094629 Query 37070 TGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATTAA 37128 || | || || | ||||| | || || ||| | ||||| || || || | || Sbjct 4094630 GGGCAAAGCGTCAGTTAAGAATTC-TTGCTCAATTTTAACAGCTTCGGAAATGATTTCAA 4094688 Query 37129 CAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAATAAACATGCAAAATCAC 37188 ||| ||| | | |||| | | | |||| || ||||| |||||||| ||||||| Sbjct 4094689 TAATTCGTTCATTACTTGGCTTCTGTATCAAATGTTGAAACATCAAACATGCGAAATCAC 4094748 Query 37189 AATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAAC 37248 |||| | ||| || |||| || | ||||| ||||| ||||| || |||||||||| Sbjct 4094749 AATGCAGACCCTCGTCTCGTGAGATTAGCTCATTGGAAAACGTTAAGCCAGGCATTAAAC 4094808 Query 37249 CTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTG 37308 | | |||||||| ||| || || | |||||| |||| || ||||||||||| || | Sbjct 4094809 CACGTTTTTTAAGCCAGAAGATCGACGCAAAACTTCCACTGAAAAAAATACCTTCCACAG 4094868 Query 37309 CTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCA-GAAATCCAttttttt 37367 |||||||||| | | |||| ||| |||||| | | | | |||||||| | Sbjct 4094869 CTGCAAATGCAATTACACGTTCACC-AAAGTTTGCCGACTTTGAGGAAATCCAAGCAAGT 4094927 Query 37368 GTCCAATCTGCCTT-TAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGtt 37426 | |||||||||||| |||| || | || |||||||| || || || | | |||| Sbjct 4094928 GCCCAATCTGCCTTACGCTTTACGGCAGGC-ATCGTTTCAATAGCATTGAATAAATAGTT 4094986 Query 37427 tttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAAT 37486 ||| || ||| | ||||| ||||| |||| || |||||||||||| || || | Sbjct 4094987 CCTTTGTTTCGAATCCTTAATATATGTATCGATTAATATACTATACATTTCGGAATGCAC 4095046 Query 37487 ATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTT 37546 || || ||||| || ||||| ||||| ||||| | || || | | ||| || || | Sbjct 4095047 GTTCTCCATAGCAATTTGAAATCCATAGAAACAACGTGCCTCTGTAACTTGGACCTCCTG 4095106 Query 37547 AAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAG 37606 | || | | | |||| || |||||||| || |||||| || ||||| || || | Sbjct 4095107 ACTGAATCGTTCAACTAAATTCTCATTAACAATACCATCAGATGCGGCAAAAAAGGCTAA 4095166 Query 37607 AACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTT 37666 || | | || ||||| | ||||| | | | | |||||||| |||||||| Sbjct 4095167 TACGTGTGAGATGAAATGCCGTTCATTGTCAGTGAGACGTGCCCAATCATCCATATCTTT 4095226 Query 37667 TGATAAATCAACTTCATCAACGGTCCAAAA 37696 || | ||| ||||| ||||| |||||||| Sbjct 4095227 AGAAAGATCCACTTCCTCAACTGTCCAAAA 4095256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592275545134880