Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_018281.1 Length=43581 Score E Sequences producing significant alignments: (Bits) Value seq884 437 2e-118 >seq884 Length=19560 Score = 437 bits (484), Expect = 2e-118 Identities = 829/1215 (68%), Gaps = 14/1215 (1%) Strand=Plus/Plus Query 675 AATCTATCTGAACTGTTACCTAAACACTTTCATAGCTTATGGAAAGCGACTAAAGATAGA 734 || ||||| ||| | ||||| ||| | |||||| |||||| ||| ||| || Sbjct 7348 AAACTATCAGAATTATTACCGAAAAAATTTCATTCGGTATGGAGAGCCACTCTTAATTCG 7407 Query 735 GAGAAGTTGAACATAGTAGCTAAAGGTGGACGTGGTAGTGGTAAGTCGTCTGATATATCT 794 || | | || || || ||| |||||||||||| |||||| || || ||||| | Sbjct 7408 GACATACTCAATATTGTTTGTAAGGGTGGACGTGGTTCTGGTAAATCATCAGATATCGCA 7467 Query 795 ATAATCATTACACAGTTAATCATGCGTTATCCTATGAATGCAGTTGTAGTACGTAAGACA 854 || ||||| || ||| | ||| | ||| || | ||||| |||| | || | Sbjct 7468 CATATTATTACTCAATTACTTATGAGGTATGCTGTCAATGCGGTTGGCATTCGATATGTT 7527 Query 855 GACAACACATTAGCTACATCAGTATTTGAGCAAATTAAGTGGGCGATAGAAGAACAAAAG 914 || || ||||||| |||| | | ||||||||| || ||||| || ||| | ||| | Sbjct 7528 GATAATACATTAGAACAATCAATCTATGAGCAAATGAAATGGGCAATTGAACAGCAAGGG 7587 Query 915 GTGTCGCACCTGTTCAAAGTTAAAGTGTCGCCAATGGAAATCACATATGTTCCTAGAGGG 974 || |||| || || ||| |||| ||||| || ||||||||| | ||| | || Sbjct 7588 GTAACGCATCTATTTAAATTTAATAAATCGCCGTTGAGAATCACATACATACCTCGTGGT 7647 Query 975 AATCGGATTATCTTTAGAGGGGCGCAGAACCCTGAACGATTAAAGTCGTTAAAAGATAGT 1034 ||| || || || ||||| || || || |||||| || | ||||| |||||||||||| Sbjct 7648 AATTATATGATTTTCAGAGGTGCCCAAAATCCTGAAAGAATCAAGTCTTTAAAAGATAGT 7707 Query 1035 CGATTCCCTTTTTCTATCATGTGGATAGAGGAGTTGGCAGAGTTTAAGACAGAAGATGAA 1094 || ||||| ||| | || ||||| |||||||| | |||||||| || ||||||||| Sbjct 7708 CGGTTCCCGTTTGCGATTGGCTGGATTGAGGAGTTAGGCGAGTTTAAAACTGAAGATGAA 7767 Query 1095 GTCACTACAATTACTAACTCTATGTTACGTGGTGAATTAGATGACGGATTATTTTACAAG 1154 || || || ||||| || || | |||||||||||||||| | || | ||||| || Sbjct 7768 GTAACGACCATTACCAATTCACTTTTACGTGGTGAATTAGGAAATGGTCTTTTTTATAAA 7827 Query 1155 TTTTTCTTTAGTTACAACCCTCCTAAGAGAAAACAATCGTGGGTTAACAAAAAATATGAG 1214 || || || || |||||||| || || | |||||| ||||| ||||| |||||||| Sbjct 7828 TTCTTTTTCAGCTACAACCCGCCAAAACGTCGACAATCTTGGGTGAACAAGAAATATGAA 7887 Query 1215 ACCTCATTCCAACCGGATAATACGTTCGTACACCATTCAACGTACTTAGATAACCCTTTT 1274 | |||||||| |||||||| || || || || || || || |||||| |||||| Sbjct 7888 TCTAGTTTCCAACCTGATAATACATTTGTTCATCACTCTACTTATAAAGATAATCCTTTT 7947 Query 1275 ATCTCTAAACAGTTTATACAAGAGGCAGAGAGTACTAAAGAACGTAACGAACTACGTTAT 1334 || || | | | || | |||| | ||| | | ||| | || | ||| | Sbjct 7948 ATTTCGAGAGAATTCTTGAAAGAAGTGGAGGCAGCAAGAGATAGAAATCCTTTTCGTGCT 8007 Query 1335 CGTTGGGAATATATGGGCGAAGCCATTGGTAGTGGCGTTGTACCGTTTAATAACTTACAA 1394 | |||||||| || ||||| || ||| ||| || || || || | ||||||| || Sbjct 8008 AGATGGGAATACGATGGTGAAGCAATCGGTTCTGGAGTCGTTCCATTCAGTAACTTAAAA 8067 Query 1395 AT--AGAAACG----ATACCCCAAGAAATGATTGACGGTTTTGACAACATAAGGAATGGC 1448 | ||||| | ||| | | |||||| ||| ||||| || || || || || Sbjct 8068 GTGGAGAAAGGCTGTATAACTGATGAAATGGTTGCTAACTTTGATAATATCAGAAACGGT 8127 Query 1449 CTTGACTTTGGATATGCTGACGATCCGTTAGCGTTTGTCCGTTGGCATTATGATAAAAAG 1508 |||||||| || |||||| ||||| ||||| || || || ||||| || ||||| || Sbjct 8128 CTTGACTTCGGTTATGCTACTGATCCATTAGCATTCGTACGATGGCACTACGATAAGAAA 8187 Query 1509 AAACGGGTTATTTACGCTATCGATGAATATTACGGTGTTCAGATTAGTAATAGGCAATAT 1568 || | || || ||| | |||||| || || || | || |||||| | | | | Sbjct 8188 AAGAATGGCATCTATGCTGTTGATGAAATCTATGGAGTGAAAATCAGTAATCGTGAGTTT 8247 Query 1569 GCAAACGAAATGTGGAAAAGAAAA---TATCAGTCAGACGACATTTACGCTGACCATGCC 1625 || | ||| | |||| |||| |||||||| || ||| | || || Sbjct 8248 GC---CCAAAAGGCGAAAGCAAAAGGTTATCAGTCTGATCGTATTGCATCGGATTCAGCA 8304 Query 1626 GAACCTAAATCAATAGCTGAATTAAAGCAAGAACATGGCATGAAAAAAGTAAGACCGGTT 1685 ||||||||||| ||||| ||||| || | ||||| || |||| | ||| |||| Sbjct 8305 GAACCTAAATCCATAGCAGAATTGAACAATGAACACGGAATGAGCCACGTATTTGGGGTT 8364 Query 1686 AAAAAAGGACCTGATAGCAGAG-AATATGGTGAACAATGGTTATCTGATTTAGAAGCTAT 1744 |||||||| || || | | | | ||||| || ||||||| |||||| || ||| Sbjct 8365 AAAAAAGGCCCCGA-CTCTGTGCAGTATGGCGAGGAATGGTTGGATGATTTGGATTTTAT 8423 Query 1745 CATAATAGATCCAAAACGTACACCGAATATAGCAAGAGAATTTGAAAACATAGATTATCA 1804 || || ||| | | || || |||||||| | ||| ||||||||||| |||||||| Sbjct 8424 TTGTATCGACCCACTAAGAACTCCAAATATAGCCAAAGAGTTTGAAAACATTGATTATCA 8483 Query 1805 AACTGATAAAGATGGAGATATTATTCCTAAATTAGAAGATAAAAACGACCATACAATTGA 1864 || ||||||||||| || || || | | ||||||||| | |||| ||||| || Sbjct 8484 GACGGATAAAGATGGCAATCCTAAGCCAAGGCTTGAAGATAAAGATAACCACACAATCGA 8543 Query 1865 CGCCACTAGATACGC 1879 || || |||||||| Sbjct 8544 TGCAACAAGATACGC 8558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139328380379352