Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_018284.1 Length=42123 Score E Sequences producing significant alignments: (Bits) Value seq884 423 5e-114 >seq884 Length=19560 Score = 423 bits (468), Expect = 5e-114 Identities = 826/1215 (68%), Gaps = 14/1215 (1%) Strand=Plus/Plus Query 618 AAACTGTCCGAACTGTTACCTAAACACTTTCATAGCTTATGGAAGGCAACTAAGGATAGA 677 ||||| || ||| | ||||| ||| | |||||| |||||| || ||| || Sbjct 7348 AAACTATCAGAATTATTACCGAAAAAATTTCATTCGGTATGGAGAGCCACTCTTAATTCG 7407 Query 678 GAGAAACTCAACATAGTAGCTAAAGGTGGACGTGGTAGTGGTAAGTCATCTGACATATCT 737 || | |||||| || || ||| |||||||||||| |||||| ||||| || || | Sbjct 7408 GACATACTCAATATTGTTTGTAAGGGTGGACGTGGTTCTGGTAAATCATCAGATATCGCA 7467 Query 738 ATTATCATTACACAGTTAATCATGCGTTATCCTATGAATGCAGTTGTAGTACGTAAGACA 797 ||| ||||| || ||| | ||| | ||| || | ||||| |||| | || | Sbjct 7468 CATATTATTACTCAATTACTTATGAGGTATGCTGTCAATGCGGTTGGCATTCGATATGTT 7527 Query 798 GATAATACATTAGCTACATCAGTGTTTGAACAAATCAAGTGGGCGATAGAAGAACAAAAG 857 ||||||||||||| |||| | | ||| ||||| || ||||| || ||| | ||| | Sbjct 7528 GATAATACATTAGAACAATCAATCTATGAGCAAATGAAATGGGCAATTGAACAGCAAGGG 7587 Query 858 GTGTCACACCTGTTCAAAGTTAAAGTGTCGCCAATGGAAATCACATATGTACCCAGAGGG 917 || | || || || ||| |||| ||||| || ||||||||| |||| | || Sbjct 7588 GTAACGCATCTATTTAAATTTAATAAATCGCCGTTGAGAATCACATACATACCTCGTGGT 7647 Query 918 AATCGGATTATCTTTAGAGGGGCACAGAACCCTGAACGATTAAAGTCGTTAAAAGATAGT 977 ||| || || || ||||| || || || |||||| || | ||||| |||||||||||| Sbjct 7648 AATTATATGATTTTCAGAGGTGCCCAAAATCCTGAAAGAATCAAGTCTTTAAAAGATAGT 7707 Query 978 CGGTTCCCTTTTTCTATCATGTGGATAGAGGAGTTGGCAGAATTTAAGACAGAGGACGAA 1037 |||||||| ||| | || ||||| |||||||| | || ||||| || || || ||| Sbjct 7708 CGGTTCCCGTTTGCGATTGGCTGGATTGAGGAGTTAGGCGAGTTTAAAACTGAAGATGAA 7767 Query 1038 GTTACAACAATTACTAACTCTATGCTACGTGGTGAATTAGATGACGGATTGTTCTACAAG 1097 || || || ||||| || || | ||||||||||||||| | || | || || || Sbjct 7768 GTAACGACCATTACCAATTCACTTTTACGTGGTGAATTAGGAAATGGTCTTTTTTATAAA 7827 Query 1098 TTTTTCTTTAGCTACAATCCACCTAAGAGAAAACAATCGTGGGTTAACAAAAAATACGAA 1157 || || || |||||||| || || || | |||||| ||||| ||||| ||||| ||| Sbjct 7828 TTCTTTTTCAGCTACAACCCGCCAAAACGTCGACAATCTTGGGTGAACAAGAAATATGAA 7887 Query 1158 ACCTCATTCCAACCGGATAATACATTCGTACATCATTCAACGTACTTAGATAACCCTTTT 1217 | |||||||| ||||||||||| || ||||| || || || |||||| |||||| Sbjct 7888 TCTAGTTTCCAACCTGATAATACATTTGTTCATCACTCTACTTATAAAGATAATCCTTTT 7947 Query 1218 ATATCTAAACAGTTTATACAAGAGGCAGAGAGTGCGAAAGAACGTAACGAACAACGTTAT 1277 || || | | | || | |||| | ||| || | ||| | || ||| | Sbjct 7948 ATTTCGAGAGAATTCTTGAAAGAAGTGGAGGCAGCAAGAGATAGAAATCCTTTTCGTGCT 8007 Query 1278 CGTTGGGAGTATATGGGGGAAGCGATAGGGAGTGGCGTTGTACCGTTTAACAATTTACAA 1337 | ||||| || || ||||| || || ||| || || || || | || ||| || Sbjct 8008 AGATGGGAATACGATGGTGAAGCAATCGGTTCTGGAGTCGTTCCATTCAGTAACTTAAAA 8067 Query 1338 AT--AGAAACG----ATACCCCAAGAAATGATTGACGGTTTTGACAACATAAGGAATGGC 1391 | ||||| | ||| | | |||||| ||| ||||| || || || || || Sbjct 8068 GTGGAGAAAGGCTGTATAACTGATGAAATGGTTGCTAACTTTGATAATATCAGAAACGGT 8127 Query 1392 CTTGACTTTGGATATGCTGACGATCCGTTAGCGTTTGTCCGTTGGCATTATGATAAAAAG 1451 |||||||| || |||||| ||||| ||||| || || || ||||| || ||||| || Sbjct 8128 CTTGACTTCGGTTATGCTACTGATCCATTAGCATTCGTACGATGGCACTACGATAAGAAA 8187 Query 1452 AAACGGGTTATTTACGCTATCGATGAATATTACGGTGTTCAGATTAGTAATAGGCAATAT 1511 || | || || ||| | |||||| || || || | || |||||| | | | | Sbjct 8188 AAGAATGGCATCTATGCTGTTGATGAAATCTATGGAGTGAAAATCAGTAATCGTGAGTTT 8247 Query 1512 GCAAACGAAATGTGGAAAAGAAAA---TATCAGTCAGACGACATTTACGCTGACCATGCC 1568 || | ||| | |||| |||| |||||||| || ||| | || || Sbjct 8248 GC---CCAAAAGGCGAAAGCAAAAGGTTATCAGTCTGATCGTATTGCATCGGATTCAGCA 8304 Query 1569 GAACCTAAATCAATAGCTGAATTAAAGCAAGAACATGGCATGAAAAAAGTAAGACCGGTT 1628 ||||||||||| ||||| ||||| || | ||||| || |||| | ||| |||| Sbjct 8305 GAACCTAAATCCATAGCAGAATTGAACAATGAACACGGAATGAGCCACGTATTTGGGGTT 8364 Query 1629 AAAAAAGGACCTGATAGCAGAG-AATATGGTGAACAATGGTTATCTGATTTAGAAGCTAT 1687 |||||||| || || | | | | ||||| || ||||||| |||||| || ||| Sbjct 8365 AAAAAAGGCCCCGA-CTCTGTGCAGTATGGCGAGGAATGGTTGGATGATTTGGATTTTAT 8423 Query 1688 CATAATAGATCCAAAACGTACACCGAATATAGCAAGAGAATTTGAAAACATAGATTATCA 1747 || || ||| | | || || |||||||| | ||| ||||||||||| |||||||| Sbjct 8424 TTGTATCGACCCACTAAGAACTCCAAATATAGCCAAAGAGTTTGAAAACATTGATTATCA 8483 Query 1748 AACTGATAAAGATGGAGATATTATTCCTAAATTAGAAGATAAAAACGACCATACAATTGA 1807 || ||||||||||| || || || | | ||||||||| | |||| ||||| || Sbjct 8484 GACGGATAAAGATGGCAATCCTAAGCCAAGGCTTGAAGATAAAGATAACCACACAATCGA 8543 Query 1808 CGCCACTAGATACGC 1822 || || |||||||| Sbjct 8544 TGCAACAAGATACGC 8558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134663089090440