Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq558 143 2e-29 seq48 141 7e-29 seq10 140 3e-28 seq154 96.9 3e-15 >seq558 Length=79715 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| | ||| | ||||| || | ||||| || || || || ||||| || || Sbjct 66408 CCACCTCTAAGACGAAGGACTAAGTGTAATGTAGACTCCTTCTGAATGTTGTAGTCTGCC 66349 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| |||||||| || || ||||| || |||||||||||||| || ||| Sbjct 66348 AATGTGCGACCATCCTCCAATTGTTTTCCGGCAAAAATTAAACGCTGTTGATCTGGTGGA 66289 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| |||||||| ||||| ||| ||| ||| | ||| || || | ||| || Sbjct 66288 ATCCCTTCCTTATCTTGGATTTTGGCTTTAACATGTTCGATAGTATCCGAAGGTTCAACC 66229 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| ||||| || || | |||||||| || || ||||| Sbjct 66228 TCAAGAGTGATGGTTTTACCCGTAAGGGTTTTTACGAAAATTTGCAT 66182 >seq48 Length=1730007 Score = 141 bits (156), Expect = 7e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || ||||| ||||| || || ||||| || ||||| |||| | || | | Sbjct 776887 ACGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGACC 776828 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||||||| || || || || ||||||||||||||||| || || || || ||||| Sbjct 776827 ATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGGATACCCTCTTT 776768 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||||||||| ||| ||| |||| | |||||||| | || || || | |||| Sbjct 776767 GTCTTGAATTTTAGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCTAAGGTGAT 776708 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || ||||| ||||| || || |||||||| Sbjct 776707 GGTCTTACCAGTTAATGTTTTGACGAAAATCTGCAT 776672 >seq10 Length=3877145 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | ||| |||| ||||||||| | || ||||| || || ||||| || |||| Sbjct 2844816 CCACCACGTAAGCGTAGAACTAAATGTAATGTGGATTCCTTCTGAATATTATAGTCGGAC 2844757 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| ||||| || || || || || |||||||| |||||||| || || Sbjct 2844756 AGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGG 2844697 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| |||||||||||||| ||| ||| | || | ||| || || | || || Sbjct 2844696 ATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTCAACC 2844637 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| ||||| || || |||||||| || || |||||||| Sbjct 2844636 TCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 2844590 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || ||||| || || || ||||| || ||||| |||| | || | | Sbjct 2845033 ACGCAATACCAAGTGAAGTGTTGACTCCTTTTGGATGTTGTAGTCGGACAATGTGCGTCC 2844974 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || ||||||||||| || || || || ||||| |||||||| || ||||| || ||||| Sbjct 2844973 GTCCTCCAATTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGGGGAATACCCTCTTT 2844914 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||||||||| ||| || |||| | || ||||| | ||| || || ||||| | Sbjct 2844913 GTCTTGAATTTTTGCTTTAACGTTTTCGATTGTATCAGAAGGTTCAACCTCCAGAGTAAT 2844854 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || || ||||| || || || ||||| Sbjct 2844853 TGTTTTTCCCGTCAATGTTTTAACGAAGATTTGCAT 2844818 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || ||||||||||| ||||| ||||| || |||||||||| | ||| | | Sbjct 2845489 ACGCAATACCAAATGAAGGGTTGATTCCTTTTGGATGTTGTAATCGGACAAAGTACGTCC 2845430 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || |||||||| ||||| ||||| |||||||| |||||||| || || || || || || Sbjct 2845429 GTCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTT 2845370 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||| || || || || |||| | ||||| || | ||| || || | ||| | Sbjct 2845369 ATCTTGGATCTTAGCCTTAACGTTTTCGATGGTGTCGGATGGTTCGACCTCCAAAGTAAT 2845310 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || || | || || || || || ||||| Sbjct 2845309 AGTTTTACCAGTAAGGGTCTTCACGAAGATTTGCAT 2845274 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||||| || ||||| || || ||||| || ||||||||||| |||| Sbjct 2847113 CCTCCGCGAAGACGTAGCACCAAATGGAGTGTCGATTCCTTCTGTATATTGTAGTCGGAC 2847054 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| || | ||||| || || || ||||| ||||||||||| || ||| Sbjct 2847053 AAAGTACGTCCATCCTCAAGCTGCTTGCCGGCGAAGATCAATCGCTGTTGATCTGGTGGA 2846994 Query 101363 ATGCCTTCTTTATCTTGAATTTT 101385 || || || |||||||| || || Sbjct 2846993 ATACCCTCCTTATCTTGGATCTT 2846971 >seq154 Length=581927 Score = 96.9 bits (106), Expect = 3e-15 Identities = 128/175 (73%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 13761 CATAACCGTTGGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGA 13820 |||| ||||| ||||| |||||||||||| ||||| || || ||| |||| || | Sbjct 259876 CATAGCCGTTTGGATCTATTCCATCCAAACTATATTTATCATTCAAAAATATTGCAGTTT 259935 Query 13821 TTAAAGCCACTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCA 13880 || ||| ||| ||| | | |||||||| || || ||||| |||||||| || | || Sbjct 259936 CTAGAGCAACTTCAGGTGTAGCCGACCATTCCAAAATCTTTTTTGCCCAATACATACGCA 259995 Query 13881 TATATCCGTGCATTTTGCCTT-GCGTTTTAAGCTGTGTCTGAGCAGCGTTCCACA 13934 | | || |||||||| |||| || || |||| |||| || |||||||||| Sbjct 259996 GAAAACCATGCATTTTACCTTCTCGCAACAA-CTGTATCTGCGCTGCGTTCCACA 260049 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 13761 CATAACCGTTGGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGA 13820 ||||||| |||||||| | || || || |||||||| ||||| ||||| ||||| | Sbjct 256011 CATAACCATTGGGATCTCTGCCGTCTAAGCTGTATTTATCGTTTAAATAAATGGCTGTTT 256070 Query 13821 TTAAAGCCACTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCA 13880 ||| ||| | || | | | |||||||| | ||| ||||| |||||||| | | | Sbjct 256071 CTAACGCCGATTCTGGAGTATTTGACCATTCCAGTATCTTTTTTGCCCAATACTTACGAA 256130 Query 13881 TATATCCGTGCATTTTGCCTT 13901 | | |||||||||||||||| Sbjct 256131 GAAACCCGTGCATTTTGCCTT 256151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396251489229204