Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq66 132 4e-26 seq10 102 6e-17 seq48 96.9 3e-15 >seq66 Length=1219739 Score = 132 bits (146), Expect = 4e-26 Identities = 180/251 (72%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 9052 ACCTCTACCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCC 9111 |||||| ||| | ||||| || || | |||||||| ||||| ||||| | ||| || Sbjct 118680 ACCTCTTCCACTTCAGGATAGAAAATACGCTCACAAATAAATTGTGCAATTCGGTCACCG 118621 Query 9112 TTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTG 9171 ||||| | |||||| || |||||||| |||| || || |||| ||| || | | Sbjct 118620 GGTTTCACCTCGAAGTCTACATCTGAATGATTAAACAATACAACACCCAAGTTTCCGCGG 118561 Query 9172 TAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAG 9231 || || ||||| | || ||||| || || ||||| || | ||| || || || |||||| Sbjct 118560 TAGTCTTCATCTACGACGCCAGCGCCAACATCGATAAAATTCTTAACGGCGAGGCCAGAG 118501 Query 9232 CGGGGCGCGATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGACC 9291 || ||||| || || || || | ||| | || ||||| || ||||||||||| | || Sbjct 118500 CGTGGCGCAATACGTCCATACGAACCCTCTGGCAATTGTACTTGCAAGTCGGTCTTCACT 118441 Query 9292 AGCCCCTTGCC 9302 ||| | || || Sbjct 118440 AGCGCTTTACC 118430 >seq10 Length=3877145 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||||| ||| || || |||||||| || || || || | || | || ||| Sbjct 2844798 ACTAAATGTAATGTGGATTCCTTCTGAATATTATAGTCGGACAGTGTGCGTCCATCCTCC 2844739 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 ||||| || || || || |||| || |||||||| | || | || ||||| || | Sbjct 2844738 AACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGGTGGGATTCCTTCCTTATCTTGA 2844679 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||| ||| | | || || || | ||| ||||||| || || |||||| Sbjct 2844678 ATTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTCAACCTCCAAAGTGATGGTTTTT 2844619 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||||||||||| || ||||||||||| Sbjct 2844618 CCCGTCAAAGTTTTGACGAAAATCTGCAT 2844590 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||| || || || ||| ||||| || ||||| || || | | || Sbjct 2845035 AGACGCAATACCAAGTGAAGTGTTGACTCCTTTTGGATGTTGTAGTCGGACAATGTGCGT 2844976 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||| ||||| || || || || | || |||||||| | ||||| ||||| Sbjct 2844975 CCGTCCTCCAATTGCTTGCCAGCGAAAATTAAACGTTGTTGATCTGGGGGAATACCCTCT 2844916 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| ||| ||| || | | | || || | || ||||||| ||| Sbjct 2844915 TTGTCTTGAATTTTTGCTTTAACGTTTTCGATTGTATCAGAAGGTTCAACCTCCAGAGTA 2844856 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||||||||| ||||| || || || ||||| Sbjct 2844855 ATTGTTTTTCCCGTCAATGTTTTAACGAAGATTTGCAT 2844818 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| |||||||| || || || ||||| |||||||| || || || | || Sbjct 2845263 AGACGCAATACCAAATGAAGAGTTGATTCCTTTTGGATATTGTAGTCCGACAGGGTGCGT 2845204 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||| || ||||||||||| |||| || |||||||| | |||| ||||||| Sbjct 2845203 CCGTCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGAATGCCCTCC 2845144 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || || || || ||| | | || || || | ||| || |||| || Sbjct 2845143 TTATCTTGGATTTTGGCCTTAACATTCTCAATAGTATCGGAAGGCTCAACTTCCAAGGTT 2845084 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || |||| || || ||||| || ||||| Sbjct 2845083 ATGGTTTTACCGGTCAGGGTCTTCACAAAGATTTGCAT 2845046 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| |||||||| || || || ||||| || |||||||| || | | | || Sbjct 2845491 AGACGCAATACCAAATGAAGGGTTGATTCCTTTTGGATGTTGTAATCGGACAAAGTACGT 2845432 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||| || ||||||||||| |||| || |||||||| | || | |||||| Sbjct 2845431 CCGTCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCC 2845372 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| || || | | | || || | || ||||||| ||| Sbjct 2845371 TTATCTTGGATCTTAGCCTTAACGTTTTCGATGGTGTCGGATGGTTCGACCTCCAAAGTA 2845312 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || | || || || || || ||||| Sbjct 2845311 ATAGTTTTACCAGTAAGGGTCTTCACGAAGATTTGCAT 2845274 >seq48 Length=1730007 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||||||||| || || ||| ||||| || ||||| || || | | ||| Sbjct 776889 AGACGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGA 776830 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| || || ||||| || |||| ||||||||||| | || | ||||| Sbjct 776829 CCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGTGGGATACCCTCT 776770 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || ||| ||| | | | || || | ||| ||||| | || Sbjct 776769 TTGTCTTGAATTTTAGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCTAAGGTG 776710 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || || ||||| || ||||||||||| Sbjct 776709 ATGGTCTTACCAGTTAATGTTTTGACGAAAATCTGCAT 776672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380911731003756