Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_019489.1 Length=41726 Score E Sequences producing significant alignments: (Bits) Value seq5340 82.4 2e-11 >seq5340 Length=1013 Score = 82.4 bits (90), Expect = 2e-11 Identities = 97/128 (76%), Gaps = 4/128 (3%) Strand=Plus/Minus Query 35813 CTAGAAAGGAATGAT--CCACATGAATGATTTAGTAATTATGAAGAATAAGCAAGCTGTT 35870 ||||||||||| || | | ||||| |||||||||||||||| | || ||||| || Sbjct 533 CTAGAAAGGAAGGAAAACAAAATGAACAATTTAGTAATTATGAAAGACAAACAAGCGGTA 474 Query 35871 ACTAGTAGCTTGCAAGTAGCAGAAACGTTTGATAAAGAACACAAAAATATCATGAGAGAC 35930 || ||||| ||||||| || ||| || ||||| |||||||| || | || |||| | Sbjct 473 ACAAGTAGTCTGCAAGTTGCTGAAGTATTCGATAAGCAACACAAAGATGT-ATTAGAGGC 415 Query 35931 -ATTGATA 35937 ||||||| Sbjct 414 AATTGATA 407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133392773149632