Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23]
5,572 sequences; 374,820,345 total letters
Query= NC_019782.1
Length=36566
Score E
Sequences producing significant alignments: (Bits) Value
seq884 80.6 6e-11
seq641 80.6 6e-11
>seq884
Length=19560
Score = 80.6 bits (88), Expect = 6e-11
Identities = 151/221 (68%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 31135 TATTTTCATTTGAATATGCACGCAGATGACGATGGATTCTTAGGGAACGCAAAAACTATT 31194
|||||||||||| |||| || ||||| |||||||| | || | || | |||
Sbjct 18 TATTTTCATTTGTCAATGCGAGCGGATGATGATGGATTTATTAATAATCCTAAGAAAATT 77
Query 31195 AGAAGAATGATCGGTGCAAGTGAAGATGACTTAAAAATTTTATTAGCAAAACAATTTGTT 31254
| ||||| | || | || ||||| ||||| | ||| | || ||| |||| ||
Sbjct 78 CAACGAATGGTTGGATGTGGAGATGATGATTTAAAGCTATTAATGGCCAAAAGATTTATT 137
Query 31255 TTAATTTTTCCAGATGGCGTAGCC---GTTATTAGAGACTGGCATATTCATAACTATATT 31311
||| ||||| ||| ||| || ||||| | | | ||| | |||||||||||||||
Sbjct 138 TTAGTTTTT---GATAGCGGAGTTATTGTTATCAAACATTGGAAAATTCATAACTATATT 194
Query 31312 CAAAAAGATCGTTATCAACCAACGGTTTATGAAAAGGATAA 31352
| ||| ||||| || ||||||| | ||| || | || ||
Sbjct 195 CGAAATGATCGATACAAACCAACTCTATATCAAGAAGAAAA 235
>seq641
Length=27874
Score = 80.6 bits (88), Expect = 6e-11
Identities = 151/221 (68%), Gaps = 6/221 (3%)
Strand=Plus/Minus
Query 31135 TATTTTCATTTGAATATGCACGCAGATGACGATGGATTCTTAGGGAACGCAAAAACTATT 31194
|||||||||||| |||| || ||||| |||||||| | || | || | |||
Sbjct 27857 TATTTTCATTTGTCAATGCGAGCGGATGATGATGGATTTATTAATAATCCTAAGAAAATT 27798
Query 31195 AGAAGAATGATCGGTGCAAGTGAAGATGACTTAAAAATTTTATTAGCAAAACAATTTGTT 31254
| ||||| | || | || ||||| ||||| | ||| | || ||| |||| ||
Sbjct 27797 CAACGAATGGTTGGATGTGGAGATGATGATTTAAAGCTATTAATGGCCAAAAGATTTATT 27738
Query 31255 TTAATTTTTCCAGATGGCGTAGCC---GTTATTAGAGACTGGCATATTCATAACTATATT 31311
||| ||||| ||| ||| || ||||| | | | ||| | |||||||||||||||
Sbjct 27737 TTAGTTTTT---GATAGCGGAGTTATTGTTATCAAACATTGGAAAATTCATAACTATATT 27681
Query 31312 CAAAAAGATCGTTATCAACCAACGGTTTATGAAAAGGATAA 31352
| ||| ||||| || ||||||| | ||| || | || ||
Sbjct 27680 CGAAATGATCGATACAAACCAACTCTATATCAAGAAGAAAA 27640
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 116881865707392
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |