Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq48 95.1 1e-14 seq10 89.7 4e-13 seq558 82.4 6e-11 >seq48 Length=1730007 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || || || ||||||||||| ||||| ||||| ||| || || || || Sbjct 776671 AATGCAGATTTTCGTCAAAACATTAACTGGTAAGACCATCACCTTAGAGGTCGAGCCATC 776730 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | || |||| || |||| || ||||||||||| | || ||||| Sbjct 776731 TGACACCATCGAAAATGTCAAAGCTAAAATTCAA-GACAAAGAGGGTATCCCACCAGATC 776789 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 ||||| | | ||||| || || ||||||||||||||| | || || |||| || | Sbjct 776790 AACAGCGTTTGATCTTCGCCGGAAAACAATTGGAAGATGGTCGCACCTTGTCCGACTACA 776849 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 |||| ||||| || || || || || |||| || Sbjct 776850 ACATCCAAAAGGAGTCAACCCTCCATTTGGTGTT 776883 >seq10 Length=3877145 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || |||||||| ||||| ||||| ||||| || |||||||| Sbjct 2844818 ATGCAAATCTTCGTTAAAACATTGACGGGAAAAACAATTACTCTGGAGGTTGAACCTTCT 2844877 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | | || ||||||| || ||||||||||| | ||| |||||| Sbjct 2844878 GATACAATCGAAAACGTTAAAGCAAAAATTCAA-GACAAAGAGGGTATTCCCCCAGATCA 2844936 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||| | | || || || ||||| |||||||| || || || |||| || || Sbjct 2844937 ACAACGTTTAATTTTCGCTGGCAAGCAATTGGAGGACGGACGCACATTGTCCGACTACAA 2844996 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 ||| ||||| || || || || ||| ||||||| Sbjct 2844997 CATCCAAAAGGAGTCAACACTTCACTTGGTATT 2845029 >seq558 Length=79715 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| || |||||||| | |||||||||||||| || || |||||||| Sbjct 66181 AATGCAAATTTTCGTAAAAACCCTTACGGGTAAAACCATCACTCTTGAGGTTGAACCTTC 66240 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || |||||| || || || || | || |||||| Sbjct 66241 GGATACTATCGAACATGTTAAAGCCAAAATCCAAGATAAGGAAGGGATTCCACCAGATCA 66300 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||| | | || ||||| || ||||||||||| ||| | || |||| || || || Sbjct 66301 ACAGCGTTTAATTTTTGCCGGAAAACAATTGGAGGATGGTCGCACATTGGCAGACTACAA 66360 Query 28733 CATTCAAAAAGAATCTAC 28750 |||||| || || ||||| Sbjct 66361 CATTCAGAAGGAGTCTAC 66378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425375911291788