Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_020197.1 Length=45606 Score E Sequences producing significant alignments: (Bits) Value seq884 113 1e-20 seq641 113 1e-20 >seq884 Length=19560 Score = 113 bits (124), Expect = 1e-20 Identities = 199/290 (69%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 8258 AACATGATCAATAACGTAGTATTAGTTGGACGTCTAACTAAAGACCCAGAATTAAAACAT 8317 || ||||| || | || || |||||||||||| |||| ||||| ||| ||| | Sbjct 796 AATATGATAAACCAAGTTGTGTTAGTTGGACGTTTAACGAAAGATATAGATTTACGCTAC 855 Query 8318 ACCGGAAACAACATCGCTGTAGCATCTTTCAGTCTTTCGGTTAACCGTCATTTCAAAAAT 8377 |||| || || || | | || | |||| | || |||||| | || | ||| Sbjct 856 ACCGCAAGTGGTTCTGCAGTTGGAAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAAC 915 Query 8378 GATAACGGAGAGCGTGAAACTGACTTTATCAATTGCGTTATCTGGAGACAGCAAGCTGAA 8437 | ||||| || || ||| | || |||||||| || || || ||| | ||| |||||| Sbjct 916 CAAAACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTTGGCGTAAGCCTGCTGAA 975 Query 8438 AACTTGGCTAACTGGGCTAAAAAAGGTGCATTGATTGGCATTACTGGACGTATTCAGACT 8497 | ||||||| | || ||||| |||| | || || ||| | ||||| ||| Sbjct 976 ACAATGGCTAATTATACTCGTAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAACT 1035 Query 8498 CGTAGCTATGAAAATCAGCAAGGTCAACGTGTTTACGTGACTGAAGTTGT 8547 |||| ||||| || || ||||| |||||||| || |||||||||||||| Sbjct 1036 CGTAATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGT 1085 >seq641 Length=27874 Score = 113 bits (124), Expect = 1e-20 Identities = 199/290 (69%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 8258 AACATGATCAATAACGTAGTATTAGTTGGACGTCTAACTAAAGACCCAGAATTAAAACAT 8317 || ||||| || | || || |||||||||||| |||| ||||| ||| ||| | Sbjct 27079 AATATGATAAACCAAGTTGTGTTAGTTGGACGTTTAACGAAAGATATAGATTTACGCTAC 27020 Query 8318 ACCGGAAACAACATCGCTGTAGCATCTTTCAGTCTTTCGGTTAACCGTCATTTCAAAAAT 8377 |||| || || || | | || | |||| | || |||||| | || | ||| Sbjct 27019 ACCGCAAGTGGTTCTGCAGTTGGAAGCTTTACTCTTGCTGTGAACCGTAACTTTACAAAC 26960 Query 8378 GATAACGGAGAGCGTGAAACTGACTTTATCAATTGCGTTATCTGGAGACAGCAAGCTGAA 8437 | ||||| || || ||| | || |||||||| || || || ||| | ||| |||||| Sbjct 26959 CAAAACGGCGAACGAGAAGCGGATTTTATCAACTGTGTAATTTGGCGTAAGCCTGCTGAA 26900 Query 8438 AACTTGGCTAACTGGGCTAAAAAAGGTGCATTGATTGGCATTACTGGACGTATTCAGACT 8497 | ||||||| | || ||||| |||| | || || ||| | ||||| ||| Sbjct 26899 ACAATGGCTAATTATACTCGTAAAGGAACATTATTAGGAGTTGTTGGCAGAATTCAAACT 26840 Query 8498 CGTAGCTATGAAAATCAGCAAGGTCAACGTGTTTACGTGACTGAAGTTGT 8547 |||| ||||| || || ||||| |||||||| || |||||||||||||| Sbjct 26839 CGTAATTATGACAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTGT 26790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145807951613952