Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq71 109 3e-19 >seq71 Length=1348405 Score = 109 bits (120), Expect = 3e-19 Identities = 159/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 |||||||| ||| || ||||||| ||||| ||||||||||| || | |||||||| Sbjct 495884 CATAAATAGATCCGGTATCCACAAGGCATAGAATAAATCTCTTGCGCGATGCTCTTCTTT 495943 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 || ||| || || | ||| || || || |||| || | ||||||||||| | ||| Sbjct 495944 GCCAGTATTTTTCTTCAAATCCAAAAACTCGAAAACGTCCGCATGCCATGGTTCCAGATA 496003 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 ||| ||||| || | || || ||||||||||| || || | ||| | ||| Sbjct 496004 GATGGCAAAGGCGCCGGGACGCTTACCGCCACCTTGATCAACATAACGTGCCACATTATT 496063 Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGT 26157 || ||| ||| |||||| ||||| ||| | ||| || ||||| Sbjct 496064 AAACACTCTCAGCATTGGCACTAAACCATTGGAAGTGCCATTTGT 496108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253022816369900