Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq183 120 4e-22 >seq183 Length=379545 Score = 120 bits (132), Expect = 4e-22 Identities = 194/278 (70%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 47788 CCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCG 47847 || || || ||||||||||| |||||| |||| ||| | ||| | |||||| ||||| Sbjct 192946 CCGGTAGCGATAACAAAATCCGCAGGTTTTTCTAATTGCAACATCATCCACATGGCCTCC 193005 Query 47848 ACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAG 47907 |||||||| |||| |||||||| ||||| | || ||||| || | | || | Sbjct 193006 ACATAATCCATGGCGTGTCCCCAATCACGTTTCGAGTCGAGATTACCCAATTCGAATGAT 193065 Query 47908 TC---TTGCTTACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAA 47964 || ||| | | | | | ||| || | | |||||| ||||| || || ||| Sbjct 193066 TCCAATTGTTGA---TGAAATATTTTCGCTACCGAGCGTGTAATTTTACGTGTCACGAAA 193122 Query 47965 GTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCG 48024 |||||||||| | ||| ||||||||||| || | || ||| | |||||| |||| | Sbjct 193123 TTTTCACCACGACGTGGTGATTCATGATTGAATAATATGCCATTGCAGGCAAACATATCA 193182 Query 48025 TATGATTCACGATAGTTCTTTACTATCCAGTACCCATA 48062 |||| ||| || ||||| | || ||||| | ||||| Sbjct 193183 TATGCTTCGCGGTAGTTAATGACAATCCAAAAGCCATA 193220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665448048315040