Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq71 152 6e-32 >seq71 Length=1348405 Score = 152 bits (168), Expect = 6e-32 Identities = 1090/1735 (63%), Gaps = 54/1735 (3%) Strand=Plus/Minus Query 75219 ACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTCTTGGAGA 75278 ||||||| ||||| || || ||||| || || || ||||| |||||| | | | || | Sbjct 496395 ACATGTTAATGCGCGTTGCCATCGGTATACATGGTGAAGATATTGATGCCGCAATTGAAA 496336 Query 75279 CATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTG 75338 ||||| || | | || | || || | || || ||||||| || ||| ||||| Sbjct 496335 CATACAACTTGCTTTCTGAGCGTTATTTTACACATGCCTCACCAACGCTATTCGCTGCTG 496276 Query 75339 GTACACCAAG--ACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAAT 75396 ||||||| |||||| |||| ||||| || | ||| ||| || ||||| Sbjct 496275 C--CACCAAGCAACCGCAATTGTCATCGTGCTTTCTGCTTACCATGGTGGACGATTCAAT 496218 Query 75397 CAACGGTATCT----AT-GGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 ||||||| | || || || | || ||||| ||||| || | || || Sbjct 496217 TGACGGTATTTTCACATCGGCACA-TCAC----TGTGCATTGATCTCCAAATCTGCAGGC 496163 Query 75452 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAAT 75511 |||||||| || | | ||| | | || || || ||| ||| |||||| Sbjct 496162 GGTATTGGTTTGAATGTGCATTGCATACGCGCGAAAGGCACTGCAATTGCGGGTACAAAT 496103 Query 75512 GGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTA 75571 || || ||||| | | |||||||| | || ||||| || || ||||| Sbjct 496102 GGCACTTCCAATGGTTTAGTGCCAATGCTGAGAGTGTTTAATAATGTGGCACGTTATGTT 496043 Query 75572 AATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCAT 75625 |||||| || ||||| | || || | || |||| |||||||||||||| Sbjct 496042 GATCAAGGTGGCGGTAAGCGTCCC---GGCGCCTTTGCCATCTATCTGGAACCATGGCAT 495986 Query 75626 GCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGACGAAGAGGCTCGGTG 75684 || || | | ||||| | || || | || | | || | |||||| ||| Sbjct 495985 GCGGACGTTTTCGAGTTTTTGGATTTGAAGAAAAATACT-GGCAAAGAAGAGCATCGCGC 495927 Query 75685 TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGG 75744 |||||| | || | || ||||||| || || || || ||| || || || | | Sbjct 495926 AAGAGATTTATTCTATGCCTTGTGGATACCGGATCTATTTATGCGACGTGTCGAAGCCGA 495867 Query 75745 TGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGA 75804 || | ||||| || | |||||| | ||| || ||| | || | |||||| Sbjct 495866 TGAAGACTGGTCGCTAATGTGTCCACATAAGTGTCCGGGTTTACATGAAGTATGGGGTGA 495807 Query 75805 GGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACC 75864 ||||| || | || || |||||| | || || | || ||| || || Sbjct 495806 AGAGTTCGAGAAATTATATGAGAAATATGAACAAGAAGGACGTGCTAATAAGAAGGTTAA 495747 Query 75865 AGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATAT 75924 ||| | ||||| || ||| | |||| ||| ||||| || ||||| || || Sbjct 495746 AGCACAAAGTCTTTGGTTTGCCATTATTGAATCGCAGGTAGAGACCGGCACACCGTACAT 495687 Query 75925 GCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAG 75984 | | || || |||||||| || | |||||||| || ||||| | || || || || | Sbjct 495686 GTTGTATAAAGATGCTTGCAATAGAAAGAGTAATCAGCAGAATATTGGCACGATTAAATG 495627 Query 75985 CTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAA 76044 ||| | || || |||||| | || || | | || ||| ||||||||||| Sbjct 495626 TAGTAATTTGTGTACCGAAATTGTTGAATATTCCGCACCCGACGAGGTAGCTGTTTGCAA 495567 Query 76045 TTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGA 76104 ||| || ||||| || | | |||||||| ||| | || | ||| | | | Sbjct 495566 TTTAGCCTCAATAGCATTGAACATGTATGTCACACCAGA---TAAAACGTATGACTTTAA 495510 Query 76105 AAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAA 76164 | ||| | ||| ||||||| |||||||| ||| | ||| | |||| ||| || Sbjct 495509 ACGGCTTAAAGAAGTCACAAAAATTGTTACGCGTAATTTGAACAAAATCATAGACGTCAA 495450 Query 76165 TTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTT 76221 | ||||||| | ||| | | |||| || ||| ||||||| | || |||||| | Sbjct 495449 TCATTATCCCTTACCGGAGGC--CAAGAAA-TCGAATTTGCGACATCGTCCCATTGGTAT 495393 Query 76222 GGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGA 76281 || | |||||| | || || | || ||||| || | ||| || ||||| Sbjct 495392 TGGCATACAAGGTTTTGCCGACGCCTTAATTTTAATGCGTTTTCCATACGAAAGTGATGA 495333 Query 76282 AGCCAAGGAGATGAATGCTCGTATCTTTGAAACCAT---GTATCACGCATCCCTGGAGGC 76338 || | | ||||| | || || ||||| || ||| ||||| |||| || Sbjct 495332 GGCATACTTGTTGAATCAACAAATATTCGAAACTATTTACTATGGCGCAT---TGGAAGC 495276 Query 76339 GAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTC 76398 |||||||||||||||||| | || | || ||||||| ||| ||||| || ||| Sbjct 495275 CAGTTGTGAATTGGCTGAAAAATATGGCACTTACGAGACATATGAAGGTTCACC--AGTC 495218 Query 76399 -CCAAGGG-GTGCTTCAGTTTGATATGTGGGAAGGTGAAAC-CAAGCTCAACTACG--AC 76453 |||||| | || || | ||| |||||||| | |||| | | || | || | || Sbjct 495217 AGCAAGGGTATACTACAATATGACATGTGGGA---TAAAACGCCAACTGATCTCTGGAAC 495161 Query 76454 TGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCA 76513 ||| | | ||||| || ||| | | ||| | || ||| | ||| | ||| Sbjct 495160 TGGACCGAATTGAAGGAGAAAATAAAGCAACATGGTGTACGCAACTCATTGTTGCTTGCA 495101 Query 76514 CCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATAC 76573 || |||||||| || || ||||||||||| |||| |||||||| | |||||||| ||| Sbjct 495100 CCGATGCCAACTGCTTCTACCGCACAAATTATGGGCAATAATGAGTCGTTTGAACCGTAC 495041 Query 76574 ACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCAC 76633 || | || || || | | || | ||||| || ||||||| | ||| Sbjct 495040 ACTTCGAATATTTATACACGTCGTGTGCTTTCGGGTGAATTCCAAGTTGTCAATCATCAC 494981 Query 76634 CTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTG 76693 | | || |||| || | ||| | ||| | |||||||| || ||| | Sbjct 494980 TTGTTACGCGATCTCACCGAGTTGGGTTTGTGGGATGATGATATGAAAAATACCATTATA 494921 Query 76694 AAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTAC 76753 | | ||||||| || ||||| || | || || | |||| |||| ||| Sbjct 494920 ACACATCGTGGTTCTATACAAAACATTGAAACCATACCGAAACATATACGCGATCTGTAC 494861 Query 76754 CGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGC 76813 || || ||||| || ||||| ||| | ||||| ||||||||||| ||| Sbjct 494860 AAGACTGTTTGGGAGATTTCAGTGAAAACCTCCATCAAAATGGCTGCAGATCGTGG-CGC 494802 Query 76814 -TTCATTGATCAAAGTCAAAGTATGAATCTATTCATGG-AAAGTCCAACGATGTCCAAGC 76871 ||||| |||||||| ||| | ||| || | ||| || ||||| ||| ||||| Sbjct 494801 ATTCATCGATCAAAGCCAATCGTTCAATATACACGTGGCCGAGCCCAACTATG-GCAAGC 494743 Query 76872 TCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTA 76926 || | ||||| || | || | |||||| || |||||||| || ||||| || Sbjct 494742 TCACCTCTATACACTTTTATGGTTGGAAAGCAGGACTCAAAACGGGCATGTATTA 494688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596528048927360