Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_020870.1 Length=25865 Score E Sequences producing significant alignments: (Bits) Value seq884 82.4 1e-11 >seq884 Length=19560 Score = 82.4 bits (90), Expect = 1e-11 Identities = 182/273 (67%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 15738 AGCATTAAATGATGGTATCTTAGGTTTTGGTGGAACAACTGAACAGGTTACTAACTCAAT 15797 ||| |||||| |||||||| | || |||||||| | | || ||| || | || Sbjct 16864 AGCTTTAAATAATGGTATCCTCGGCTTTGGTGGGTCTGCAGAGATGGTAGACAATGCGAT 16923 Query 15798 TACCCAATTAAGTCAAGCGTTCTCTAATGGTAAGATTGACGCTGAAACATGGAACTCTAT 15857 | ||| || ||| | || || |||||||| | || || |||| |||||||| || Sbjct 16924 CATCCAGCTATCACAATCATTTTCAAATGGTAAAGTAGATGCGCAAACTTGGAACTCAAT 16983 Query 15858 GATTGATAGTGGTTTGGGTCCCACATTGAATGCTATGGCTAAACAAATGGGCATTACCAC 15917 |||| | ||||||||||| || | | || || | || ||||||||||| | || | Sbjct 16984 GATTAACAGTGGTTTGGGCCCAGCTCTAAACGCATTAGCGAAACAAATGGGGTTAACTGC 17043 Query 15918 AGGAGCCCTTAAATCTGGCTTATCTGACGGTTCAATTTCTGTATCTCAATTTAATGACGC 15977 || | ||| || | ||||| ||||||||||| || ||||| | ||| | Sbjct 17044 TGGTCAGATGAAAGAAGGTCTCTCTGATGGTTCAATTTCAGTTGAAGAATTTCAAGACTC 17103 Query 15978 ACTTGTTAACCTTGATAAAAATGGTGGTGGGGG 16010 || |||| | ||||| | || ||||| || Sbjct 17104 TCTAATTAAATTGAATAAAGAAGGCGGTGGAGG 17136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 82644275196208