Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_020880.1 Length=26769 Score E Sequences producing significant alignments: (Bits) Value seq884 96.9 6e-16 >seq884 Length=19560 Score = 96.9 bits (106), Expect = 6e-16 Identities = 248/378 (66%), Gaps = 0/378 (0%) Strand=Plus/Plus Query 14676 GCATTAAATGATGGTATCTTAGGTTTTGGCGGAACAACTGAACAGGTTACTAACTCAATT 14735 || |||||| |||||||| | || ||||| || | | || ||| || | || Sbjct 16865 GCTTTAAATAATGGTATCCTCGGCTTTGGTGGGTCTGCAGAGATGGTAGACAATGCGATC 16924 Query 14736 ACCCAATTAAGTCAAGCGTTCTCTAATGGTAAGATTGACGCTGAAACATGGAACTCAATG 14795 | ||| || ||| | || || |||||||| | || || |||| |||||||||||| Sbjct 16925 ATCCAGCTATCACAATCATTTTCAAATGGTAAAGTAGATGCGCAAACTTGGAACTCAATG 16984 Query 14796 ATTGATAGTGGTTTGGGCCCAACTTTGAATGCTATGGCTAAGCAAATGGGCATTACTACT 14855 ||| | ||||||||||||||| || | || || | || || |||||||| | ||| || Sbjct 16985 ATTAACAGTGGTTTGGGCCCAGCTCTAAACGCATTAGCGAAACAAATGGGGTTAACTGCT 17044 Query 14856 GGTGCTCTAAAGTCTGGCTTGTCTGATGGTTCTATTTCTGTATCTCAATTTAATGACGCA 14915 ||| | || || | ||||||||||| ||||| || ||||| | ||| | Sbjct 17045 GGTCAGATGAAAGAAGGTCTCTCTGATGGTTCAATTTCAGTTGAAGAATTTCAAGACTCT 17104 Query 14916 CTTGTGAACCTTGATAAAAATGGTGGTGGGGGTATTGCTTCACTATCTAAGATTGCGCAA 14975 || | || | ||||| | || ||||| || || || || ||||||| || Sbjct 17105 CTAATTAAATTGAATAAAGAAGGCGGTGGAGGCCTTAAATCGTTAGAGCAGATTGCTAAA 17164 Query 14976 GATAGTACGAGCGGTATTGGAACAGCTATGGCTAATGCAAAAACTGCTGTGACTCGTGGT 15035 || ||| |||||| ||| | ||||||| |||||||| | |||||| Sbjct 17165 GACTCTACTGCAGGTATTAAAACCGGATTGGCTAACATGAAAACTGCGATTGTTCGTGGC 17224 Query 15036 GTTGCAGATATTATCACT 15053 || || || || | ||| Sbjct 17225 GTGGCCAATGTTGTTACT 17242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 85536888823952