Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq558 179 7e-40 seq10 141 2e-28 seq48 114 2e-20 >seq558 Length=79715 Score = 179 bits (198), Expect = 7e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||||||||| | ||||| || | || ||||||| ||| || ||| || ||||| | Sbjct 66409 ACCACCTCTAAGACGAAGGACTAAGTGTAATGTAGACTCCTTCTGAATGTTGTAGTCTGC 66350 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || || | | ||| || ||||||||||||||||||||||| | ||||||||| || || Sbjct 66349 CAATGTGCGACCATCCTCCAATTGTTTTCCGGCAAAAATTAAACGCTGTTGATCTGGTGG 66290 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || ||||| |||||||| ||||||| ||| | || | |||||||| |||| ||||| Sbjct 66289 AATCCCTTCCTTATCTTGGATTTTGGCTTTAACATGTTCGATAGTATCCGAAGGTTCAAC 66230 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || |||||||| || || |||||||| || ||||||||| Sbjct 66229 CTCAAGAGTGATGGTTTTACCCGTAAGGGTTTTTACGAAAATTTGCATT 66181 >seq10 Length=3877145 Score = 141 bits (156), Expect = 2e-28 Identities = 173/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | || || || || | ||| ||||| | || || ||||||| Sbjct 2844825 ATTTGCATACCACCACGTAAGCGTAGAACTAAATGTAATGTGGATTCCTTCTGAATATTA 2844766 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| | || | ||| || || ||||| || || ||||| || | |||||| Sbjct 2844765 TAGTCGGACAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGA 2844706 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || |||||||| |||||||| ||||| | ||| | ||| ||||||||||||| Sbjct 2844705 TCTGGTGGGATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATAGTATCGGAA 2844646 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||| || | ||| || ||||| || || | ||||| || || || ||||| Sbjct 2844645 GGCTCAACCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 2844590 Score = 132 bits (146), Expect = 9e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | ||||| |||| ||| | ||||| ||| || || || || ||| Sbjct 2844591 ATACCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCG 2844532 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || || | || || | |||||| |||||||| ||||| | |||||||| || Sbjct 2844531 GACAAGGTACGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGG 2844472 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||| || || || || | ||| | |||| |||||||||||| | ||| Sbjct 2844471 GGGATTCCTTCTTTGTCCTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCA 2844412 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || ||||| || || || || || | || || || || ||||||||||| Sbjct 2844411 ACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 2844359 Score = 132 bits (146), Expect = 9e-26 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | || | ||||| ||| | || | || || ||||| Sbjct 2845281 ATTTGCATACCACCACGGAGACGCAATACCAAATGAAGAGTTGATTCCTTTTGGATATTG 2845222 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | || | || || |||||||| |||||||| || || | |||||| Sbjct 2845221 TAGTCCGACAGGGTGCGTCCGTCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGA 2845162 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || || |||||||| ||||||| || | ||| ||||||||||||| Sbjct 2845161 TCTGGTGGAATGCCCTCCTTATCTTGGATTTTGGCCTTAACATTCTCAATAGTATCGGAA 2845102 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||||||| | ||||| |||||||| || || || || ||||| |||||||| Sbjct 2845101 GGCTCAACTTCCAAGGTTATGGTTTTACCGGTCAGGGTCTTCACAAAGATTTGCAT 2845046 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || |||||||| |||||||| || || | |||||||| || || ||||| || ||| Sbjct 2845428 TCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCCTTA 2845369 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | || | ||| || || ||||| | || || || | ||| ||| Sbjct 2845368 TCTTGGATCTTAGCCTTAACGTTTTCGATGGTGTCGGATGGTTCGACCTCCAAAGTAATA 2845309 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || || || || || |||||||| Sbjct 2845308 GTTTTACCAGTAAGGGTCTTCACGAAGATTTGCAT 2845274 >seq48 Length=1730007 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || | |||| ||| | || | ||| || || || |||||| Sbjct 776901 ATACCACCACGAAGACGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAGTCG 776842 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || || | | ||| || |||||||||||||| || || || | ||||||||| || Sbjct 776841 GACAAGGTGCGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCTGGT 776782 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || ||||| ||||| ||||| | ||| | |||| || || || || | ||| Sbjct 776781 GGGATACCCTCTTTGTCTTGAATTTTAGCTTTGACATTTTCGATGGTGTCAGATGGCTCG 776722 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || |||| || || || ||||| |||| ||||| || || || |||||| Sbjct 776721 ACCTCTAAGGTGATGGTCTTACCAGTTAATGTTTTGACGAAAATCTGCATT 776671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899591739071040