Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq7 197 2e-45 seq10 105 1e-17 >seq7 Length=4380649 Score = 197 bits (218), Expect = 2e-45 Identities = 480/719 (67%), Gaps = 13/719 (2%) Strand=Plus/Plus Query 17980 TAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAG 18039 ||| || | ||| || |||||||| | ||| | ||||| | | |||||||||||| | Sbjct 4094561 TAACAAGCGATCAGCCACAAATTCTATATAATCGGACATTGATTTGCAATTCATACCAAT 4094620 Query 18040 TAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTAT 18099 || | | || | ||| ||| | | ||||||| ||| || | ||||| || || Sbjct 4094621 TAAATTTACGGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTTTAACAGCTTCGGAAAT 4094680 Query 18100 TATGTTTATTACCC-TAGATT--TTGGCAATTTATTAATTATGTGATTATAATATAATAA 18156 || | || | | | ||| ||||| || | || | || | | || || | | Sbjct 4094681 GATTTCAATAATTCGTTCATTACTTGGC---TTCTGTATCAAATGTTGA-AACATCA--A 4094734 Query 18157 ACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAA 18216 ||| || |||||| || | ||| || |||| || |||| || || ||||||||| Sbjct 4094735 ACATGCGAAATCACAATGCAGACCCTCGTCTCGTGAGATTAGCTCATTGGAAAACGTTAA 4094794 Query 18217 CCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAA 18276 || ||||||| ||| | |||||| ||||| || ||||| || ||||| | | || || Sbjct 4094795 GCCAGGCATTAAACCACGTTTTTTAAGCCAGAAGATCGACGCAAAACTTCCACTGAAAAA 4094854 Query 18277 TATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACT-GTATTTATTGCTCA 18335 ||||| || || || || || |||| | |||| |||| | | ||| | Sbjct 4094855 AATACCTTCCACAGCTGCAAATGCAATTACACGTTCACCAAAGTTTGCCGACTTTGAGGA 4094914 Query 18336 GTATCCATTTTTGTGCCCATTCT-CCTTNNNNNNNNATACACGGTATACTCTCTATAGCA 18394 ||||| ||||||| ||| |||| || || || | || |||||| Sbjct 4094915 A-ATCCAAGCAAGTGCCCAATCTGCCTTACGCTTTACGGCA-GGCATCGTTTCAATAGCA 4094972 Query 18395 TTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATAC 18454 || || |||| | ||| ||| ||||| || ||||| || |||||||| | | |||| Sbjct 4094973 TTGAATAAATAGTTCCTTTGTTTCGAATCCTTAATATATGTATCGATTAATATACTATAC 4095032 Query 18455 ATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGA 18514 ||||| ||||| | | | |||||||| || ||||| | ||| || | | ||||| | | Sbjct 4095033 ATTTCGGAATGCACGTTCTCCATAGCAATTTGAAATCCATAGAAACAACGTGCCTCTGTA 4095092 Query 18515 TATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGAT 18574 ||| | ||| | |||| ||| || |||||||||||||| ||||| |||| | Sbjct 4095093 ACTTGGACCTCCTGACTGAATCGTTCAACTAAATTCTCATTAACAATACCATCAGATGCG 4095152 Query 18575 GCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCAT 18634 || ||||| || || || | | |||||||| |||||| || ||||| ||| Sbjct 4095153 GCAAAAAAGGCTAATACGTGTGAGATGAAATGCCGTTCATTGTCAGTGAGACGTGCCCAA 4095212 Query 18635 TCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTG 18693 ||||| |||||||| || ||||| ||||| || ||||||||| || | ||| ||||| Sbjct 4095213 TCATCCATATCTTTAGAAAGATCCACTTCCTCAACTGTCCAAAACGACGCTTCTGCCTG 4095271 >seq10 Length=3877145 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || ||||||||||||| |||||||| ||||| | || || ||| |||| Sbjct 2844818 ATGCAAATCTTCGTTAAAACATTGACGGGAAAAACAATTACTCTGGAGGTTGAACCTTCT 2844877 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || |||||| ||| ||||| ||||| ||||| || || || ||||| ||| Sbjct 2844878 GATACAATCGAAAACGTTAAAGCAAAAATTCAAGACAAAGAGGGTATTCCCCCAGATCAA 2844937 Query 155943 CAAAGATTGATTTATGCCGGTAAGCA 155968 ||| | || |||| || || ||||| Sbjct 2844938 CAACGTTTAATTTTCGCTGGCAAGCA 2844963 Score = 96.9 bits (106), Expect = 5e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || | ||||| ||||||||||| || || |||||| || Sbjct 2845274 ATGCAAATCTTCGTGAAGACCCTTACTGGTAAAACTATTACTTTGGAGGTCGAACCATCC 2845333 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||| || ||| || |||||||| || || || || ||||| ||| Sbjct 2845334 GACACCATCGAAAACGTTAAGGCTAAGATCCAAGATAAGGAGGGAATCCCACCAGATCAA 2845393 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | ||||||||| || | || || | ||||| || ||||| | Sbjct 2845394 CAACGTTTGATCTTTGCCGGTAAACAATTGGAGGACGGACGTACTTTGTCCGATTACA-- 2845451 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTT 156034 | ||||||| || | || |||||||| || || Sbjct 2845452 ACATCCAAAAGGAATCAACCCTTCATTTGGTATT 2845485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731821025115200