Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq7 201 2e-46 seq558 161 2e-34 seq48 152 1e-31 seq10 149 1e-30 >seq7 Length=4380649 Score = 201 bits (222), Expect = 2e-46 Identities = 470/712 (66%), Gaps = 15/712 (2%) Strand=Plus/Plus Query 49646 TAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAA 49705 ||| || | ||| || |||||||| | ||| | |||||| ||| ||||||||||| | Sbjct 4094561 TAACAAGCGATCAGCCACAAATTCTATATAATCGGACATTGATTTGCAATTCATACCAAT 4094620 Query 49706 TAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaat 49765 ||| || | || || || ||| | ||||||| || |||| ||||||| ||| Sbjct 4094621 TAAATTTACGGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTTTAACAGCTTCGGAAAT 4094680 Query 49766 tatc---ataattatattattttttgataatttatatttaatatgattcgcatatattaa 49822 || |||||| | ||| ||| || | | | | ||| | | | || || Sbjct 4094681 GATTTCAATAATTCGTTCATTACTTGGC---TTCTGTATCAAATGTTG---AAACATCAA 4094734 Query 49823 ACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 49882 |||||| |||||| ||| | ||||||||| | || || | ||||| ||| ||||| Sbjct 4094735 ACATGCGAAATCACAATGCAGACCCTCGTCTCGTGAGATTAGCTCATTGGAAAACGTTAA 4094794 Query 49883 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 49942 || |||||||| || | ||||||||||| || || || |||||||| | | || || Sbjct 4094795 GCCAGGCATTAAACCACGTTTTTTAAGCCAGAAGATCGACGCAAAACTTCCACTGAAAAA 4094854 Query 49943 TATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTA---ATTTATCATC 49999 ||||| || ||| |||||||| |||| | | | ||||| || | || | | Sbjct 4094855 AATACCTTCCACAGCTGCAAATGCAATTACACGTTCACCAAAGTTTGCCGACTT-TGAGG 4094913 Query 50000 TAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGC 50059 ||| |||| | ||||||||||| || || | | ||| || |||| ||||| Sbjct 4094914 AAAT--CCAAGCAAGTGCCCAATCTGCCTTACGCTTTACGGCAGGCATCGTTTCAATAGC 4094971 Query 50060 TTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATA 50119 || ||||| | || ||| | ||||||| | ||| Sbjct 4094972 ATTGAATAAATAGTTCCTTTGTTTCGAATCCTTAATATATGTATCGATTAATATACTATA 4095031 Query 50120 CATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGA 50179 |||||| ||||| || |||||||| ||||||||| ||| || | ||| |||| Sbjct 4095032 CATTTCGGAATGCACGTTCTCCATAGCAATTTGAAATCCATAGAAACAACGTGCCTCTGT 4095091 Query 50180 ATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGC 50239 | || || || | |||||||||||||||||||||| ||||||||||||||||| Sbjct 4095092 AACTTGGACCTCCTGACTGAATCGTTCAACTAAATTCTCATTAACAATACCATCAGATGC 4095151 Query 50240 TGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCA 50299 || || || ||||| |||| | || ||||| |||||| || | | | | |||| Sbjct 4095152 GGCAAAAAAGGCTAATACGTGTGAGATGAAATGCCGTTCATTGTCAGTGAGACGTGCCCA 4095211 Query 50300 AGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCT 50351 | || | ||| || || | ||| ||||| || | ||||||||| || ||| Sbjct 4095212 ATCATCCATATCTTTAGAAAGATCCACTTCCTCAACTGTCCAAAACGACGCT 4095263 >seq558 Length=79715 Score = 161 bits (178), Expect = 2e-34 Identities = 187/249 (75%), Gaps = 5/249 (2%) Strand=Plus/Minus Query 192292 CTTTTTA-GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTT 192350 ||| ||| |||| || ||||||||||||||| | ||||| ||||| |||| ||| || Sbjct 66427 CTTCTTACGTTTCTTAGCACCACCTCTAAGACGAAGGACTAAGTGTAATGTAGACTCCTT 66368 Query 192351 AGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAA 192410 || || || || | ||||| || |||| ||||||||||| || ||||| ||||| Sbjct 66367 CTGAATGTTGTAGTCTGCCAATGTGCGACCATCCTCCAATTGTTTTCCGGCAAAAATTAA 66308 Query 192411 TCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTT-- 192468 | ||||||||| ||||| || ||||| |||||||| ||||| ||| |||| ||| Sbjct 66307 ACGCTGTTGATCTGGTGGAATCCCTTCCTTATCTTGGATTTTGGCTTTAACAT--GTTCG 66250 Query 192469 ATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAAT 192528 |||| ||| || | ||| || || ||||| ||||||||||| || | ||||| | || Sbjct 66249 ATAGTATCCGAAGGTTCAACCTCAAGAGTGATGGTTTTACCCGTAAGGGTTTTTACGAAA 66190 Query 192529 ATCTGCATT 192537 || |||||| Sbjct 66189 ATTTGCATT 66181 >seq48 Length=1730007 Score = 152 bits (168), Expect = 1e-31 Identities = 177/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| ||| |||||||| | |||||| || || ||||| | || | ||| || ||| | Sbjct 776909 GTTCAATGATACCACCACGAAGACGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGT 776850 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | || || || || || || |||| ||||||||||| || || ||||| || | ||||| Sbjct 776849 TGTAGTCGGACAAGGTGCGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTT 776790 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 |||| ||||| || || ||||| ||||| |||||| ||| ||||| || | || | Sbjct 776789 GATCTGGTGGGATACCCTCTTTGTCTTGAATTTTAGCTTTGACATTTTCGATGGTGTCAG 776730 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 | | || || |||| || ||||| ||||||||||||||||| | || ||||||||| Sbjct 776729 ATGGCTCGACCTCTAAGGTGATGGTCTTACCAGTTAATGTTTTGACGAAAATCTGCATT 776671 >seq10 Length=3877145 Score = 149 bits (164), Expect = 1e-30 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTC-TAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATC 192365 |||||||| | |||| |||| ||||||||||| || | || || |||||||| || Sbjct 2844819 ATACCACCACGTAAG-CGTAGAACTAAATGTAATGTGGATTCCTTCTGAATATTATAGTC 2844761 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | ||| ||| |||| ||||| ||||| ||||| || || || | |||||||| || Sbjct 2844760 GGACAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGG 2844701 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| |||||||| |||||||| |||||| ||| ||||| |||| ||| || | || Sbjct 2844700 TGGGATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTC 2844641 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| |||||||| || || || ||||| | || |||||||| Sbjct 2844640 AACCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 2844590 Score = 145 bits (160), Expect = 2e-29 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || ||||| | |||| ||| || ||| || ||||| Sbjct 2844591 ATACCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCG 2844532 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || ||| | || |||| ||||||||| ||||||||||| | |||||||| || Sbjct 2844531 GACAAGGTACGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGG 2844472 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| || || || ||| ||| ||||| |||| ||| || | ||| Sbjct 2844471 GGGATTCCTTCTTTGTCCTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCA 2844412 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || ||||| ||||| || ||||| || || || | || || |||||||| Sbjct 2844411 ACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 2844359 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| ||||| ||||| | ||| | || || |||||| || || Sbjct 2845275 ATACCACCACGGAGACGCAATACCAAATGAAGAGTTGATTCCTTTTGGATATTGTAGTCC 2845216 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| | || |||||||||||||| |||||||| || | |||||||| ||| Sbjct 2845215 GACAGGGTGCGTCCGTCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGT 2845156 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || |||||||| ||||| || ||||| |||| ||| || | || Sbjct 2845155 GGAATGCCCTCCTTATCTTGGATTTTGGCCTTAACATTCTCAATAGTATCGGAAGGCTCA 2845096 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || ||||||||||| || | || || | ||| || ||||| Sbjct 2845095 ACTTCCAAGGTTATGGTTTTACCGGTCAGGGTCTTCACAAAGATTTGCAT 2845046 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| ||||| ||||| | || | || || ||| || ||||| Sbjct 2845503 ATGCCACCACGGAGACGCAATACCAAATGAAGGGTTGATTCCTTTTGGATGTTGTAATCG 2845444 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || ||| | || |||||||||||||| |||||||| || | |||||||| ||| Sbjct 2845443 GACAAAGTACGTCCGTCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGT 2845384 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || |||||||| || ||| || || || || | || || | ||| Sbjct 2845383 GGGATTCCCTCCTTATCTTGGATCTTAGCCTTAACGTTTTCGATGGTGTCGGATGGTTCG 2845324 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | |||||| ||||||||||| | || || | || || ||||| Sbjct 2845323 ACCTCCAAAGTAATAGTTTTACCAGTAAGGGTCTTCACGAAGATTTGCAT 2845274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984409716742200