Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq558 165 1e-35 seq7 152 9e-32 seq10 149 1e-30 seq48 129 1e-24 >seq558 Length=79715 Score = 165 bits (182), Expect = 1e-35 Identities = 188/249 (76%), Gaps = 5/249 (2%) Strand=Plus/Minus Query 171825 CTTTTTA-GTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTT 171883 ||| ||| ||||| || |||||||||||| || | ||||| ||||| |||| ||| || Sbjct 66427 CTTCTTACGTTTCTTAGCACCACCTCTAAGACGAAGGACTAAGTGTAATGTAGACTCCTT 66368 Query 171884 AGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAA 171943 ||| || || |||| || | || | || ||||||||||| || ||||||||||| Sbjct 66367 CTGAATGTTGTAGTCTGCCAATGTGCGACCATCCTCCAATTGTTTTCCGGCAAAAATTAA 66308 Query 171944 TCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTT-- 172001 | |||||| || ||||| || ||||| |||||||| ||||| ||| |||| ||| Sbjct 66307 ACGCTGTTGATCTGGTGGAATCCCTTCCTTATCTTGGATTTTGGCTTTAACAT--GTTCG 66250 Query 172002 ATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAAT 172061 |||||||| || | ||| || || ||||| ||||||||||| || | ||||| | ||| Sbjct 66249 ATAGTATCCGAAGGTTCAACCTCAAGAGTGATGGTTTTACCCGTAAGGGTTTTTACGAAA 66190 Query 172062 ATCTGCATT 172070 || |||||| Sbjct 66189 ATTTGCATT 66181 >seq7 Length=4380649 Score = 152 bits (168), Expect = 9e-32 Identities = 456/712 (64%), Gaps = 15/712 (2%) Strand=Plus/Plus Query 38948 TAATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAA 39007 ||| || | ||| ||||||||||| | ||| | ||||| ||| ||||||||||| | Sbjct 4094561 TAACAAGCGATCAGCCACAAATTCTATATAATCGGACATTGATTTGCAATTCATACCAAT 4094620 Query 39008 TAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaat 39067 ||| || | || || || ||| | ||||||| || |||| ||||||| ||| Sbjct 4094621 TAAATTTACGGGCAAAGCGTCAGTTAAGAATTCTTGCTCAATTTTAACAGCTTCGGAAAT 4094680 Query 39068 tatc---ataattatattattttttgataatttatatttaatatgattcgcatataGTAA 39124 || |||||| | ||| ||| || | | | | ||| | | | | || Sbjct 4094681 GATTTCAATAATTCGTTCATTACTTGGC---TTCTGTATCAAATGTTG---AAACATCAA 4094734 Query 39125 ACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 39184 |||||| ||||| ||| | ||| ||||| | || || | ||||| ||| ||||| Sbjct 4094735 ACATGCGAAATCACAATGCAGACCCTCGTCTCGTGAGATTAGCTCATTGGAAAACGTTAA 4094794 Query 39185 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 39244 || |||||||| || | ||||||||||| || || || |||||||| | | || || Sbjct 4094795 GCCAGGCATTAAACCACGTTTTTTAAGCCAGAAGATCGACGCAAAACTTCCACTGAAAAA 4094854 Query 39245 TATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTA---ATTTATCATC 39301 ||||| |||||| |||||||| |||| | | | ||||| || | || | | Sbjct 4094855 AATACCTTCCACAGCTGCAAATGCAATTACACGTTCACCAAAGTTTGCCGACTT-TGAGG 4094913 Query 39302 TAAAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGC 39361 |||||||| | ||||||||||| || || | | ||| || |||| ||||| Sbjct 4094914 --AAATCCAAGCAAGTGCCCAATCTGCCTTACGCTTTACGGCAGGCATCGTTTCAATAGC 4094971 Query 39362 TTTAAATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATA 39421 || ||||| | | | ||| Sbjct 4094972 ATTGAATAAATAGTTCCTTTGTTTCGAATCCTTAATATATGTATCGATTAATATACTATA 4095031 Query 39422 CATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGA 39481 |||||| ||||| || |||||||| ||||||||| ||| || | ||| |||| Sbjct 4095032 CATTTCGGAATGCACGTTCTCCATAGCAATTTGAAATCCATAGAAACAACGTGCCTCTGT 4095091 Query 39482 ATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGC 39541 | || || || | |||||||||||||||||||||| ||||||||||||||||| Sbjct 4095092 AACTTGGACCTCCTGACTGAATCGTTCAACTAAATTCTCATTAACAATACCATCAGATGC 4095151 Query 39542 TGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCA 39601 || || || ||||| || | | || ||||| |||||| || | | | | |||| Sbjct 4095152 GGCAAAAAAGGCTAATACGTGTGAGATGAAATGCCGTTCATTGTCAGTGAGACGTGCCCA 4095211 Query 39602 AGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCT 39653 | || | ||| || || | ||| ||||| || | ||||||||| || ||| Sbjct 4095212 ATCATCCATATCTTTAGAAAGATCCACTTCCTCAACTGTCCAAAACGACGCT 4095263 >seq10 Length=3877145 Score = 149 bits (164), Expect = 1e-30 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 171840 ATACCACCTC-TAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 |||||||| | |||| |||| ||||||||||| || | || || ||||||||| || Sbjct 2844819 ATACCACCACGTAAG-CGTAGAACTAAATGTAATGTGGATTCCTTCTGAATATTATAGTC 2844761 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 || | | ||| | || ||||| ||||| ||||| ||||| || | ||||| || || Sbjct 2844760 GGACAGTGTGCGTCCATCCTCCAACTGTTTGCCAGCGAAAATCAAACGTTGTTGATCTGG 2844701 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 ||| |||||||| |||||||| |||||| ||| ||||| |||||||| || | || Sbjct 2844700 TGGGATTCCTTCCTTATCTTGAATTTTAGCTTTGACATTCTCAATAGTATCGGAAGGCTC 2844641 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| |||||||| || || || ||||| | ||| |||||||| Sbjct 2844640 AACCTCCAAAGTGATGGTTTTTCCCGTCAAAGTTTTGACGAAAATCTGCAT 2844590 Score = 136 bits (150), Expect = 7e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || ||||| | |||| ||| || || || ||||| Sbjct 2844591 ATACCACCACGTAGACGAAGAACCAAATGAAGTGTAGACTCCTTCTGGATGTTGTAATCG 2844532 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | ||| |||| |||| ||||||||| ||||| ||||| | ||||| || || Sbjct 2844531 GACAAGGTACGTCCGTCTTCCAGTTGTTTACCGGCAAAGATTAAACGTTGTTGATCTGGG 2844472 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| || || || ||| ||| ||||| |||||||| || | ||| Sbjct 2844471 GGGATTCCTTCTTTGTCCTGAATCTTAGCTTTAACATTTTCAATAGTATCGGATGGTTCA 2844412 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || ||||| ||||| || ||||| || || || | ||| || |||||||| Sbjct 2844411 ACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCATTTT 2844359 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || ||||| ||||| | || | || || || || ||||| Sbjct 2845503 ATGCCACCACGGAGACGCAATACCAAATGAAGGGTTGATTCCTTTTGGATGTTGTAATCG 2845444 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| ||| |||| |||||||||||||| ||||| || || | ||||| || ||| Sbjct 2845443 GACAAAGTACGTCCGTCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGT 2845384 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || |||||||| || ||| || || || || || || || | ||| Sbjct 2845383 GGGATTCCCTCCTTATCTTGGATCTTAGCCTTAACGTTTTCGATGGTGTCGGATGGTTCG 2845324 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | |||||| ||||||||||| | || || | ||| || ||||| Sbjct 2845323 ACCTCCAAAGTAATAGTTTTACCAGTAAGGGTCTTCACGAAGATTTGCAT 2845274 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || ||||| ||||| | ||| | || || ||||| || || Sbjct 2845275 ATACCACCACGGAGACGCAATACCAAATGAAGAGTTGATTCCTTTTGGATATTGTAGTCC 2845216 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| |||| |||||||||||||| ||||| || || | ||||| || ||| Sbjct 2845215 GACAGGGTGCGTCCGTCCTCCAATTGTTTACCGGCAAAGATCAAACGTTGTTGATCTGGT 2845156 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| ||||| || ||||| |||||||| || | || Sbjct 2845155 GGAATGCCCTCCTTATCTTGGATTTTGGCCTTAACATTCTCAATAGTATCGGAAGGCTCA 2845096 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || ||||||||||| || | || || | || || ||||| Sbjct 2845095 ACTTCCAAGGTTATGGTTTTACCGGTCAGGGTCTTCACAAAGATTTGCAT 2845046 >seq48 Length=1730007 Score = 129 bits (142), Expect = 1e-24 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || |||||||| | ||| || || || ||||| | || | ||| || || || || Sbjct 776904 ATGATACCACCACGAAGACGCAACACCAAATGGAGGGTTGACTCCTTTTGGATGTTGTAG 776845 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || || | || | || ||||||||||| || || || || || | |||||| || Sbjct 776844 TCGGACAAGGTGCGACCATCTTCCAATTGTTTTCCGGCGAAGATCAAACGCTGTTGATCT 776785 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || || ||||| ||||| |||||| ||| ||||| || || || || | Sbjct 776784 GGTGGGATACCCTCTTTGTCTTGAATTTTAGCTTTGACATTTTCGATGGTGTCAGATGGC 776725 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || |||| || ||||| ||||||||||||||||| | ||| ||||||||| Sbjct 776724 TCGACCTCTAAGGTGATGGTCTTACCAGTTAATGTTTTGACGAAAATCTGCATT 776671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905072957277600