Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq31 131 5e-25 seq22 118 3e-21 seq225 105 2e-17 seq434 96.9 1e-14 >seq31 Length=2576887 Score = 131 bits (144), Expect = 5e-25 Identities = 231/328 (70%), Gaps = 8/328 (2%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 ||||||||||||||||| ||||| || | | ||| || | | | ||| || || ||| Sbjct 123293 CCAACAGCATCAATTTCATCAATAAACAAAATACAGGGTGCGTGCTTTCTAGCCATCGCA 123234 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | || | ||||| |||| |||| ||||||| |||| || | ||| || || || Sbjct 123233 AACATATCGCGAACACGTGATGGACCAACACCAACAAACATCTCCAGAAACTCTGAGCCG 123174 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 ||||| ||||| | |||||||||||||| || |||| | ||||| | || || Sbjct 123173 GATACGCTTATGAAAGGAACATTTGCTTCGCCAGCCGTTGCCTTTGCCAGCAAAGTTTTT 123114 Query 289210 CCTGTTCCAGGTGGTCCCTCTAA-TAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACT 289267 || ||||||||||| ||| ||| | | | || || |||| ||||| || || | Sbjct 123113 CCAGTTCCAGGTGG-CCCAGTAAGCATAGCACCTTTGGGTATCTTTGCGCCGAGGTCA-A 123056 Query 289268 TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTT-GCCTCA 289326 |||| | | || | ||||| || | |||| |||| || ||| |||||| ||||| Sbjct 123055 TATACTGTTGGGGATTTTTTAAGAAGTTCACAAATTCCATAATTTC-TATTTTGGCCTCC 122997 Query 289327 TCACATCCTGCTACAT--CAGCAAAAGT 289352 ||||| ||||| || | | |||||||| Sbjct 122996 TCACAACCTGCAACGTCCCTGCAAAAGT 122969 >seq22 Length=2856468 Score = 118 bits (130), Expect = 3e-21 Identities = 191/272 (70%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || | |||||| ||||||||||||||| || || |||||||| ||| Sbjct 226025 TCCATAGCCTTTATGAGACGACGTTGAATATAACCAGTTTCAGCAGTCTTTACAGCAGTA 225966 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 || || ||||| |||||||||||||||| || || | | || ||| | || Sbjct 225965 TCGATAAGACCTTCACGACCACCCATAGCGTGAAAATAGAATTCGGAAGGTGTCAAGCCG 225906 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751 ||| | | || | || ||||| ||||| | ||| || || ||||||| ||| | Sbjct 225905 GCAAGATATGAATTTTCCACGAAGCCACGTGACTCAGGACCGTAATCGTC---TTTGATG 225849 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || || |||| || | || | | ||||| || ||||| || || ||||||||||| Sbjct 225848 AAATGAGGCAATGTGCGCTTACGAAAACCGTACGGTATACGTTTACCCTCAACGTTCTGT 225789 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || |||| || | ||| | ||| || ||||| Sbjct 225788 TGACCCACACAAGCAATAACCTGTGAGATATT 225757 >seq225 Length=316289 Score = 105 bits (116), Expect = 2e-17 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 289120 CCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCG 289179 |||||| || ||| ||||||||| | | | | || | ||||| |||||||| ||| Sbjct 40729 CCAACAAGCACTTCATCAAATTCAGGCCCAGCTGCATGGAAGAATGGAACATTTGCCTCG 40670 Query 289180 CCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACT 289239 || || ||||| | || || || || || || || |||||||||||| | |||||||| Sbjct 40669 CCAGCAACTGCACGTGCAAGTAGCGTTTTGCCAGTGCCAGGTGGTCCCACCAATAGAACG 40610 Query 289240 CCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACA 289299 || ||||||| ||| | ||| | | | | ||||| || || || | ||| || || Sbjct 40609 CCTTTTGGTAATTTACCGCCAAGATTCGAAAACTTCTCCGGACTTTTAAGAAACTCAACG 40550 Query 289300 ATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | ||| | | ||| | || || ||||||||||| ||||| |||| || Sbjct 40549 ACTTCTTTTAATTCTTGCTTGGCTTCATCACATCCCTTAACATCGTCAAATGT 40497 >seq434 Length=94533 Score = 96.9 bits (106), Expect = 1e-14 Identities = 123/166 (74%), Gaps = 5/166 (3%) Strand=Plus/Plus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 ||||||| | ||||| |||||||||||||||||||| | ||||| |||||| || | Sbjct 21437 GCACCGTATGAAATCAAGCAATCACGTTCCATTTCACCCAAACGCAAACCACCTTC--TC 21494 Query 233333 GAC--CTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAAT 233390 ||| | ||| || | |||||| || | || | | ||||||| | ||||| || Sbjct 21495 GACTGCGACCTTGTGTGGGTTGACGTGTGAGCACCGCTTTTGGACCACGTGCACGCGCAT 21554 Query 233391 TAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGG 233436 |||||||| | ||||||||||||||| || ||||| |||||| Sbjct 21555 GCATTTTATCCTGCACCATATGCTTCAGTTTCTGATAAT-ACACGG 21599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471712525101764