Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zeugodacus_20cucurbitae_20[refseq_20GCF_5F000806345.1_202014-12-23] 5,572 sequences; 374,820,345 total letters Query= NC_021784.1 Length=38099 Score E Sequences producing significant alignments: (Bits) Value seq884 95.1 3e-15 >seq884 Length=19560 Score = 95.1 bits (104), Expect = 3e-15 Identities = 536/851 (63%), Gaps = 27/851 (3%) Strand=Plus/Minus Query 18984 TCTTCG---AATGCGTAACGAGTCGCATCGATCGTATGGTTATTTTTATCCTCCAACTTC 19040 |||||| || ||||| | || |||||||| || ||||||| |||||| || | | | Sbjct 8570 TCTTCGCTAAAAGCGTATCTTGTTGCATCGATTGTGTGGTTATCTTTATCTTCAAGCCTT 8511 Query 19041 GGTTTTGGATTGCCGTCTGCGTCAACCTGGTAGTCAATCGACTCAAATTCTCTTGCAATG 19100 || || |||||||| ||| || ||| || ||||| ||||| ||| | || || Sbjct 8510 GGCTTAGGATTGCCATCTTTATCCGTCTGATAATCAATGTTTTCAAACTCTTTGGCTATA 8451 Query 19101 TTCGGCGTTCGCTTCGGATCAATCACAATTGCCTCTAAATCATCCAGCCACTTTTCCCCG 19160 || || |||| || || || ||| || |||||||||| ||| | || || Sbjct 8450 TTTGGAGTTCTTAGTGGGTCGATACAAATAAAATCCAAATCATCCAACCATTCCTCGCCA 8391 Query 19161 TACTCCACGCTTCCCGGTCCTTTCTTGGCCCCTTTAATCCTTGGA--ATGCCATGCTCTT 19218 |||| ||| | || ||||| || |||| ||| | ||| || || || || | Sbjct 8390 TACTGCACAGAGTCGGGGCCTTTTTTAACCCCA--AATACGTGGCTCATTCCGTGTTCAT 8333 Query 19219 TCTTCATCTCATCCACCGATTTCGGCTCGGCACTGTCAGCGAT--AATTGGTTCTACATG 19276 | |||| || | | ||||| || || || || |||| ||| | || || Sbjct 8332 TGTTCAATTCTGCTATGGATTTAGGTTCTGCTGAATC--CGATGCAATACGATCAGACTG 8275 Query 19277 GTAATTTTTCGCTTTGATTTTTTCAGCTACTTCTCGATTCGAAAGTTTTACGCCGTATAT 19336 ||| ||| ||||| |||| || | || ||||| | ||| || || || || Sbjct 8274 ATAACCTTTTGCTTTCGCCTTTTGGGCAAACTCACGATTACTGATTTTCACTCCATAGAT 8215 Query 19337 TTCATCGATCGCGTAAATGGTTCGCCGGGTTTTATCATAGTGCCAACGTACAAACGCAAA 19396 |||||| | || || ||| | | ||||| |||||||| ||||| || || || Sbjct 8214 TTCATCAACAGCATAGATGCCATTCTTTTTCTTATCGTAGTGCCATCGTACGAATGCTAA 8155 Query 19397 CGGATCCACACCATATCCCCAGTCAATGCCTTGACGAATGTTATCAAATTGCTTAATCTC 19456 ||||| | |||| || |||||| || | | || |||||||| | || | Sbjct 8154 TGGATCAGTAGCATAACCGAAGTCAAGACCGTTTCTGATATTATCAAAGTTAGCAACCAT 8095 Query 19457 CTCATCCGTAATGG-----TTCGGAACACTAAA-TTATCAAACGGCACGACGCCACTGCC 19510 ||||| || || ||| || | || ||| || || ||||| ||| || Sbjct 8094 TTCATCAGTTATACAGCCTTTCTCCACTTTTAAGTTACTGAATGGAACGACTCCAGAACC 8035 Query 19511 TATCGGTTCGCCAAGATATTC--ATGACG---GTACTTCATCTCATTCGTTCGCTTCGTA 19565 || | ||| ||| ||||| || | | | || || || | ||| | Sbjct 8034 GATTGCTTCACCATCGTATTCCCATCTAGCACGAAAAGGATTTCTATCTCTTGCTGC--- 7978 Query 19566 TGCTCGGCTTCCTCGATGAAATCTCGCGACAAAAACGGGTTGTCCAGATACGTGGAGTGA 19625 ||| |||| | | ||| |||| ||| | ||| || || || ||| || |||||| Sbjct 7977 --CTCCACTTCTTTCAAGAATTCTCTCGAAATAAAAGGATTATCTTTATAAGTAGAGTGA 7920 Query 19626 TGAACGAACGTGTTTTCAGGAAGAAATTGTGTCTCGTACTTTTGGTTGACCCATGACTGT 19685 ||||| || || || ||||| | || | || || || | ||| ||||| || ||| Sbjct 7919 TGAACAAATGTATTATCAGGTTGGAAACTAGATTCATATTTCTTGTTCACCCAAGATTGT 7860 Query 19686 CTTCGCTTTGGTGGATTGTAGCTGTaaaaaaaCGTGTAACGCAATCCGTCTGGAAGCTCT 19745 | || ||||| || ||||||||| |||| || | ||| | || | | | || Sbjct 7859 CGACGTTTTGGCGGGTTGTAGCTGAAAAAGAATTTATAAAAAAGACCATTTCCTAATTCA 7800 Query 19746 CCACGCAACACAGATTTTTCAATAACAGATACTTCTTCTTCTGCCTTAAACTCTGCCAGC 19805 ||||| || | || || ||| | |||||| ||||| | |||||||| | | | Sbjct 7799 CCACGTAAAAGTGAATTGGTAATGGTCGTTACTTCATCTTCAGTTTTAAACTCGCCTAAC 7740 Query 19806 TCCTCAATCCA 19816 ||||||||||| Sbjct 7739 TCCTCAATCCA 7729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 121787141116104